0
votes
0
replies
36
views
0
votes
4
replies
193
views
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
•
0
Hi Michael,
I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★
1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024).
In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part:
```
design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa)
colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Awards
• All
Popular Question to
Gordon Smyth
50k
Popular Question to
Zainab
•
0
Popular Question to
Theo
▴
10
Popular Question to
gene_bioconductor
▴
10
Popular Question to
rohitsatyam102
▴
20
Locations
• All
United Kingdom, 32 minutes ago
France, 39 minutes ago
India, 2 hours ago
The city by the bay, 3 hours ago
WEHI, Melbourne, Australia, 5 hours ago
United Kingdom, 32 minutes ago
France, 39 minutes ago
India, 2 hours ago
The city by the bay, 3 hours ago
WEHI, Melbourne, Australia, 5 hours ago
Traffic: 527 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6