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Fold Change calculation when Batch Effect is present in RNA-seq data (DEseq2)
DESeq2
BatchEffect
fold
19 months ago
eve.olszanowski
• 0
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Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
bravaccinimirea
• 0
I am experiencing the same problem, I tried with all the advices I found in similar posts but nothing seems to work
Comment: can't open mghp.osn.xsede.org
by
merv
▴ 120
Seeing this issue today, now with the R 4.3 + Bioc 3.18 version of this package. It is the Bioconductor servers that redirect to this unrel…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf
by
Brandon
▴ 20
I did try again...*repeatedly*...I even tried it on a VM. Thankfully I got it to work on the VM. I still can't get it to work on windows t…
Comment: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.1k
Hi, What do you get if you run the following `httr::HEAD()` command? I noticed that you have `libcurl` version 8.3.0 from `curl::curl_vers…
Comment: Slightly different count plots from R and spreadsheet
by
boczniak767
▴ 720
Thank you @mikelove for your patience and kind advice. So I assume the plots from R are valid. Best wishes.
Votes
can't open mghp.osn.xsede.org
Answer: can't open mghp.osn.xsede.org
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Comment: recount3 problem downloading data from source sra
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