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genesis
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207
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GENESIS: error in crossprod
GENESIS
10 weeks ago
Stephanie M. Gogarten
▴ 870
0
votes
2
replies
407
views
GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS
GWASTools
GDSfile
updated 4 months ago by
Stephanie M. Gogarten
▴ 870 • written 4 months ago by
Mindy wang
• 0
0
votes
2
replies
392
views
SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS
SeqVarTools
updated 5 months ago by
Stephanie M. Gogarten
▴ 870 • written 5 months ago by
pjuge
• 0
1
vote
1
reply
444
views
HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS
autosome-only=FALSE?
PCAir
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
gabry.scata
• 0
0
votes
0
replies
272
views
How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS
admixMap
6 months ago
mailtoshivam13
• 0
2
votes
5
replies
771
views
assocTestSingle output with GxE
GENESIS
updated 10 months ago by
Stephanie M. Gogarten
▴ 870 • written 10 months ago by
SuperDad
• 0
6 results • Page
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
When using `arrayWeights()`, you mean the variability within the same group, is that correct? I alway run `arrayWeights()` because I naive …
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Sey R.
• 0
Thank you for your response
Comment: Different number of exons in reference genome affects DEXSeq analysis
by
Alejandro Reyes
★ 1.9k
Hi Alessia. Makes sense. Something I use often are the support levels from ENSEMBL and the annotation of principal isoforms. These substant…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Michael Love
41k
Sorry, for questions about statistical analysis plan and interpretation of results, I recommend to work with a local statistician or someon…
Answer: Fold change calculation in Diffbind vs. DESEQ2?
by
Michael Love
41k
There was a recent DiffBind question on the support site that noticed the same thing, try searching recent DiffBind posts.
Votes
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
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