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Showing :
GENESIS
•
reset
0
votes
0
replies
135
views
Conditional analysis
GENESIS
9 weeks ago
SuperDad
• 0
0
votes
1
reply
314
views
GENESIS: error in crossprod
GENESIS
5 months ago
Stephanie M. Gogarten
▴ 870
0
votes
2
replies
534
views
GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS
GWASTools
GDSfile
updated 7 months ago by
Stephanie M. Gogarten
▴ 870 • written 7 months ago by
Mindy wang
• 0
0
votes
2
replies
497
views
SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS
SeqVarTools
updated 8 months ago by
Stephanie M. Gogarten
▴ 870 • written 8 months ago by
pjuge
• 0
1
vote
1
reply
573
views
HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS
autosome-only=FALSE?
PCAir
updated 8 months ago by
James W. MacDonald
66k • written 8 months ago by
gabry.scata
▴ 10
0
votes
0
replies
350
views
How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS
admixMap
9 months ago
mailtoshivam13
• 0
2
votes
5
replies
918
views
assocTestSingle output with GxE
GENESIS
updated 13 months ago by
Stephanie M. Gogarten
▴ 870 • written 13 months ago by
SuperDad
• 0
0
votes
1
reply
503
views
Reference categories for factors
assocTestSingle
GENESIS
written 17 months ago by
SuperD
• 0
0
votes
2
replies
794
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix
GENESIS
Plants
21 months ago
Monica
• 0
1
vote
2
replies
4.3k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.5 years ago by
Anna
• 0 • written 4.6 years ago by
solanum
• 0
0
votes
1
reply
920
views
Approximations to Est and Est.SE in GENESIS
GENESIS
3.6 years ago
Stephanie M. Gogarten
▴ 870
0
votes
0
replies
742
views
X chromosome analyses for males in GENESIS
GENESIS
3.7 years ago
Stephanie M. Gogarten
▴ 870
0
votes
3
replies
1.5k
views
Alternate allele for GENESIS?
genesis
effect allele
association analysis
updated 3.9 years ago by
Stephanie M. Gogarten
▴ 870 • written 3.9 years ago by
ucbtapc
• 0
0
votes
1
reply
852
views
using GENESIS R package with non-human species
genesis
gwastools
4.0 years ago
Stephanie M. Gogarten
▴ 870
0
votes
2
replies
981
views
Association testing model in GENESIS
genesis
updated 4.0 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.0 years ago by
o.giannakopoulou
• 0
0
votes
1
reply
1.2k
views
GENESIS multiple gds files
genesis
gds
SeqVarData
updated 4.1 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.1 years ago by
JT
• 0
0
votes
8
replies
1.7k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
4.5 years ago
alipka
▴ 10
2
votes
1
reply
735
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 4.5 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.5 years ago by
lassana.a.samarakoon
▴ 10
0
votes
0
replies
918
views
Normalisation of Data before loading in TMixClust
rna-seq
tmixclust
k-means clustering
gene expression
genesis
4.6 years ago
astridite
• 0
2
votes
1
reply
873
views
Why did the Wald test disappear from GENESIS?
genesis
4.7 years ago
Stephanie M. Gogarten
▴ 870
1
vote
3
replies
1.4k
views
Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
4.8 years ago
Corey.Cox
• 0
1
vote
1
reply
1.1k
views
Calculating the z score from wald test association results in GENESIS
GENESIS
zscore
wald
updated 4.8 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.8 years ago by
lassana.a.samarakoon
▴ 10
3
votes
6
replies
1.5k
views
Interpreting the output of score test using GENESIS
genesis
output
score
updated 4.8 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.8 years ago by
lassana.a.samarakoon
▴ 10
2
votes
4
replies
1.2k
views
Sporadic missingness with admixmmap
genesis
admixmap
updated 4.9 years ago by
Stephanie M. Gogarten
▴ 870 • written 4.9 years ago by
GENOMIC_region
• 0
0
votes
3
replies
1.8k
views
Can't install Genesis
Genesis
Installation
updated 5.0 years ago by
Mike Smith
★ 6.5k • written 5.0 years ago by
winstondunnmd
▴ 10
0
votes
3
replies
1.3k
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 5.0 years ago by
mconomos
▴ 70 • written 5.0 years ago by
ferranpauls10
• 0
6
votes
11
replies
2.9k
views
Genesis: doubts with admixMAPMM
genesis
admixmap
updated 5.3 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.3 years ago by
GENOMIC_region
• 0
0
votes
1
reply
966
views
betas for binary outcome
genesis
5.3 years ago
Stephanie M. Gogarten
▴ 870
0
votes
13
replies
2.5k
views
GENESIS pcrelate() write gds file doesn't work
genesis
pcrelate
gds
updated 5.4 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.4 years ago by
o.giannakopoulou
• 0
4
votes
2
replies
1.9k
views
Imputed dosages in GENESIS
genesis
gwastools
seqarray
5.8 years ago • updated 5.5 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.0k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
5.5 years ago
naglemi
▴ 10
1
vote
1
reply
997
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 5.7 years ago by
mconomos
▴ 70 • written 5.7 years ago by
naglemi
▴ 10
1
vote
1
reply
1.0k
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis
pcrrelate
gds
updated 5.7 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.7 years ago by
roll
• 0
0
votes
1
reply
964
views
Using previously calculated PCs in GENESIS
genesis
snprelate
5.8 years ago
Stephanie M. Gogarten
▴ 870
0
votes
1
reply
1.1k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 5.8 years ago by
zhengx
▴ 30 • written 5.9 years ago by
naglemi
▴ 10
0
votes
1
reply
840
views
selecting SNPs and samples in GENESIS
genesis
6.0 years ago
Stephanie M. Gogarten
▴ 870
0
votes
3
replies
1.3k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 6.0 years ago by
mconomos
▴ 70 • written 6.0 years ago by
naglemi
▴ 10
3
votes
4
replies
1.6k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 6.0 years ago by
mconomos
▴ 70 • written 6.0 years ago by
naglemi
▴ 10
2
votes
8
replies
1.8k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis
pcair
6.2 years ago
GENOMIC_region
• 0
0
votes
7
replies
1.9k
views
GENESIS: king2mat: subscript out of bounds
genesis
6.2 years ago
Stephanie M. Gogarten
▴ 870
40 results • Page
1 of 1
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
▴ 730
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to
maltethodberg
▴ 180
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to
Michael Love
42k
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to
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★ 1.1k
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to
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51k
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