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updated 6 months ago by
James W. MacDonald
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Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
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0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
•
0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says
```
index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma
by
Chris
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0
Thanks James! That is a great tip.
cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design)
Error in Stat[iset]…
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