Showing : heatmaps • reset
1
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5
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960
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Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 3 days ago by 68k • written 3 days ago by ▴ 10
0
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2
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658
views
DESeq2 Heatmap
heatmaps
updated 4 months ago by ★ 1.4k • written 4 months ago by • 0
0
votes
3
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1.2k
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 7 months ago by 68k • written 7 months ago by ▴ 50
1
vote
5
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1.8k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 9 months ago by • 0
2
votes
1
reply
1.2k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 9 months ago by ★ 4.8k • written 9 months ago by • 0
0
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0
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319
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Error in drawHeatmap function
GeneOverlap heatmaps
11 months ago Johanna • 0
0
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2
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1.1k
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 11 months ago by 68k • written 11 months ago by • 0
0
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1
reply
2.3k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 18 months ago by ▴ 780 • written 18 months ago by • 0
0
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1
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2.4k
views
edgeR heatmap construction and interpretation
heatmaps
updated 19 months ago by 52k • written 19 months ago by • 0
0
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3
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1.1k
views
Installing Gpart
gpart heat heatmaps
updated 19 months ago by 68k • written 19 months ago by • 0
0
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2
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1.1k
views
Drawing a heatmap with only limited genes
heatmaps
updated 23 months ago by • 0 • written 23 months ago by • 0
1
vote
1
reply
800
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.1 years ago by ▴ 80 • written 2.2 years ago by ▴ 10
0
votes
1
reply
999
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.2 years ago by ★ 4.8k • written 2.2 years ago by • 0
0
votes
2
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1.6k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.2 years ago shuangshuang • 0
0
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0
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1.4k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.3 years ago gianni.drm • 0
0
votes
1
reply
1.2k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.3 years ago by ★ 4.8k • written 2.3 years ago by ▴ 10
2
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3
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1.7k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.3 years ago by ▴ 40 • written 2.3 years ago by ▴ 10
2
votes
2
replies
1.1k
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.3 years ago Sooni ▴ 10
4
votes
5
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6.0k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.3 years ago by 52k • written 2.4 years ago by ▴ 10
2
votes
5
replies
2.4k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.4 years ago Katharina • 0
0
votes
1
reply
4.0k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
0
votes
3
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2.0k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
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1
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2.3k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.7 years ago by ▴ 290 • written 2.7 years ago by • 0
1
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1
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1.5k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
0
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2
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7.6k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
2.9 years ago Bhavana • 0
0
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3
replies
1.8k
views
Persisting error in making a heatmap
heatmaps gplots
2.9 years ago beslinail • 0
1
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1
reply
1.1k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
0
votes
1
reply
1.5k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.7 years ago by ▴ 40 • written 3.7 years ago by • 0
0
votes
2
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2.2k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.9 years ago Clara ▴ 10
0
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1
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3.3k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by ▴ 10
1
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1
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1.2k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 30
4
votes
5
replies
1.8k
views
DEseq2 results
heatmaps DEGs PCA
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by • 0
0
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0
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939
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.2 years ago by 68k • written 6.2 years ago by ▴ 10
33 results • Page 1 of 1
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Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0
Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…
Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0
The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …
Comment: parameters of filterByExpr by Paul Harrison ▴ 110
It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…
Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k
voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…
Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0
Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…
Votes
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
A: what should I do with many zero counts from Salmon quantification
Comment: parameters of filterByExpr
GAlignments Cigar to GRanges
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