Biostar Heatmaps

Showing : heatmaps • reset

votes

153

views

DESeq2 topGO heatmaps

updated 4 months ago by Guandong Shang ▴ 20 • written 4 months ago by anasjamshed1994 • 0

votes

replies

213

views

DESeq2 ExpressionData heatmaps pca

7 months ago Clara • 0

votes

544

views

R heatmaps pheatmap

updated 10 months ago by Kevin Blighe 3.4k • written 10 months ago by trichorico ▴ 10

vote

221

views

DESeq2 DiffSeq PrincipalComponent rlog heatmaps

updated 10 months ago by Michael Love 35k • written 10 months ago by Fischer-philipp ▴ 30

votes

replies

386

views

heatmaps DEGs PCA

updated 10 months ago by Kevin Blighe 3.4k • written 10 months ago by MOHAMMAD • 0

votes

replies

356

views

heatmaps input file

updated 2.9 years ago by James W. MacDonald 58k • written 2.9 years ago by bony.dekumar • 0

6 results • Page 1 of 1

Recent ...

Replies

Comment: Cannot install Phyloseq and dada2 by Guido Hooiveld ★ 3.2k

Did you notice this message:? Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.0.0/libra…

Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between by i.sudbery ▴ 20

Thanks Mike. I might have a play with stratifying by expression level. One reason I wasn't looking at gene set testing is that its the nul…

Answer: submitting a BSgenome package by deisianyufg • 0

From my Github repository. I am sorry, I thought the package was already released and realize now that is still only in my github reposito…

Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp by swbarnes2 ▴ 970

Is the one plot a mirror image of the other?

Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between by Michael Love 35k

hi Ian, Great question, and good to be concerned that the mean expression may be a confounder for either analysis, Why not stratify your…

Votes

Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between

Answer: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))

Comment: submitting a BSgenome package

Answer: rlog vs vst for outlier identification

Answer: DESeq2 median of ratios normalization for signature score calculation

Awards • All