Biostar Heatmaps

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119

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DESeq2 ExpressionData heatmaps pca

5 weeks ago Clara • 0

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242

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R heatmaps pheatmap

updated 4 months ago by Kevin Blighe 3.2k • written 4 months ago by trichorico ▴ 10

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136

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DESeq2 DiffSeq PrincipalComponent rlog heatmaps

updated 4 months ago by Michael Love 33k • written 4 months ago by Fischer-philipp ▴ 30

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247

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heatmaps DEGs PCA

updated 4 months ago by Kevin Blighe 3.2k • written 4 months ago by MOHAMMAD • 0

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290

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heatmaps input file

updated 2.4 years ago by James W. MacDonald 57k • written 2.4 years ago by bony.dekumar • 0

5 results • Page 1 of 1

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Comment: DESeq2 question: why I got discrepancy results for DEGs when using different way by Ming ▴ 350

Thx for the advice about the reference levels, in which I did do as you suggested! In fact, I even tried more options just want to see why…

Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels by Gordon Smyth 43k

> is there a way to incorporate also the information of the additional samples that lack any of the aforementioned levels? NA values are n…

Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by James W. MacDonald 57k

The `voomLmFit` function will automatically fit a linear mixed model accounting for within-subject correlations if you block on patient, so…

Comment: error in getBM (biomaRt): "error: no such table: metadata" by Mike Smith ★ 5.0k

Thanks for providing this solution. Anyone else encountering the issue can test if the cache is a problem by running `getBM()` with the ar…

Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels by svlachavas ▴ 780

Dear James, thank you very much for your comment; please excuse me for my naïve additional question, but is there an example in the edgeR …

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tximeta error in fetching genome info

Answer: error in getBM (biomaRt): "error: no such table: metadata"

C: DESeq2 design formula: single control for multiple conditions [RIP-seq]

DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)

Answer: cannot install edgeR on M1 Mac

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Scholar to James W. MacDonald 57k

Teacher to Guido Hooiveld ★ 3.0k

Scholar to Michael Love 33k