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Answer: RPPA data (Proteomics analysis) by Gordon Smyth 47k
Manipulating results is easy in R and limma. Just read the examples and documentation, for example `help("topTable")`. The limma results i…
Comment: Question about filter by expression (filterByExpr) in edgeR by Gordon Smyth 47k
Something like what? I advised you to use "all treatment factors" and use the "whole design matrix" but you've done the opposite, omitting…
Comment: Full list of differential genes not obtained in topTable by Ankita • 0
thank you I tried it and it worked.
Answer: Full list of differential genes not obtained in topTable by Gordon Smyth 47k
When you have a question, the first thing you can do to help yourself is to read the help page for the function, in this case `?topTable`. …
Comment: Question about filter by expression (filterByExpr) in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Meaning, something like the the below? filterByExpr (y)
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A: Factor levels and Differential Expression analysis: Error in `contrasts<-`(`*tmp
Comment: Gene Onotology: Can't get the goana function to work
Answer: Unable to upload an App in shinyapps.io with bioconductor packages
Comment: Help with Error in DiffBind
A: How to deal with Affymetrix GeneChip probeids that map to multiple genes
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