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Comment: dba.count() error when re-centering peaks
by
Rory Stark
★ 4.4k
I've checked in a fix for this (`DiffBind_3.6.3`). It had to do with specifying `minOverlap=0` in the initial call to `dba()`. Did you mea…
Comment: I cannot install "microbiome"
by
shepherl
3.2k
Is there any additional output / ERROR when you try ``` BiocManager::install("GenomeInfoDbData") ```
Comment: Issue installing DEP package
by
shepherl
3.2k
Can you please show the command and all output when you try ``` BiocManager::install("DEP") ``` as well as the results from ``` sessionIn…
Comment: Issues installing DESeq2 package with R version 4.2.1
by
ATpoint
★ 1.4k
It's perfectly compatible, but without any error message or code nobody can help you.
Comment: Detection of reference genes by Deseq2
by
sj
▴ 10
Ok, I used plotMA() and it seems fine. Thanks ATpoint!
Votes
Comment: Detection of reference genes by Deseq2
Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc
Comment: SingleCellExperiment: Edit cluster IDs in colLabels
Comment: what should be our references when 2 samples which I compare are treated and the
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