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Answer: Struggling to convert a large list of non-model genes into human orthologs, any
by
James W. MacDonald
66k
Normally I would suggest using the `Orthology.eg.db` package, which you can use to map between two species. Unfortunately you have what NCB…
Comment: DESeq2 ML Query
by
Michael Love
42k
Scaled counts would be `counts(dds, normalized=TRUE)` > might the flow hypothetically look like this? yes. Stick with VST, we prefer thi…
Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
by
Michael Love
42k
Not a problem :)
Comment: Unable to create pd file for ChAMP analysis
by
tahirah.yasmin2014
• 0
Hi! I hope you solved your problem. I think you could make those two columns with the headers and keep them empty as you don't have the inf…
Comment: DESeq2 ML Query
by
chris2.a.white
• 0
Thank you Mike. Re: "The VST or scaled counts should be fine." So either the DESeqTransform object following VST, or the txi object (txi…
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A: makeContrasts from limma overides "i" as a varible
Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR
Comment: Issues with retrieving mouse SNP dataset: biomaRt error: looks like we're connec
running apeglm on a normal model and multiple coefficients
Answer: SeSAMe DMR for EPIC V2
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