7.0 years ago
christophelemetre
•
0
0
votes
0
replies
771
views
Recent ...
Replies
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴
10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
JKim
•
0
Hi Emily,
He left some comments regarding normalization. Here is the relevant quote:
> The EList object produced by dpcQuant(), containi…
Votes
Awards
• All
Popular Question to
Stephanie M. Gogarten
▴
890
Autobiographer to
Frances Turner
▴
20
Popular Question to
maltethodberg
▴
180
Popular Question to
mohammedtoufiq91
▴
10
Popular Question to
Lluís Revilla Sancho
▴
760
Locations
• All
United States, just now
United States, 26 minutes ago
University of Washington, 48 minutes ago
United States, 51 minutes ago
United States, 1 hour ago
United States, just now
United States, 26 minutes ago
University of Washington, 48 minutes ago
United States, 51 minutes ago
United States, 1 hour ago
Traffic: 1019 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6