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Comment: Weird dispersion and volcano plots in DEA with paired samples
by
lara
•
0
@mikelove do you mean to color `Pair` with different colors? In our case, we have almost 200 pairs so it's hard to visualize them by colors.
Answer: Time-course, comparison of two groups
by
Gordon Smyth
47k
edgeR allows any number of explanatory factors, so you can have time-series for any number of treatments.
If you have replicates, then I w…
Comment: different number of DEG because of outliers
by
Pedro Baldoni
▴
30
The function `catchKallisto` in edgeR reads in the output from kallisto and estimates the mapping ambiguity overdispersion similarly
Comment: How to compute(calculate) rlog and vst provided from DESeq2
by
tstpp
•
0
Thank you for your kind reply!
I try to understand them.
Answer: DESeqDataSetFromMatrix NA values
by
ATpoint
★
2.3k
You have NAs in your matrix, simple as that. The check that runs internally is really just a `any(is.na(cts))`. Your check `is.numeric()` i…
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