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Answer: Comparison of results obtained from a subset of the data versus the complete dat
by
swbarnes2
★
1.4k
In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.
Comment: Differential expression analysis using two TCGA datasets
by
ATpoint
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4.8k
If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…
Answer: PhD scholar
by
ATpoint
★
4.8k
Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…
Answer: how to use `arrayWeightsQuick()`?
by
Gordon Smyth
52k
Yes, that is the correct way to use `arrayWeightsQuick`.
Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…
Answer: fast apply on RleList
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story.benjamin
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20
solved with viewApply (code is simplified below) + map reduce on chrs
test.split <- split(test.gr,seqnames(test.gr))
final.st…
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