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Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts? by Christian • 0

Thank you for the response and apologies for my late reply. I think I´m starting getting the concept now. The hints with the cqn is quite …

Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts? by Christian • 0

Thank you for the response and apologies for my late reply. It`s a relieve that lengthScaledTPM and counts with offset both seem to perform…

Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts? by Christian • 0

Thank you for the response (and to the other responders as well) and apologies for my late reply. Especially the reference to Soneson is ve…

Comment: DESeq2, results(dds, name = <reference>) interpretation results by Rockbar • 0

Hello James, Thank you for answering > testing that the mean expression of the time 2, condition A samples is > different from zero I ha…

Comment: DeSeq2 design fails (full model matrix is less than full rank) by James W. MacDonald 63k

Both ATpoint and Basti have already told you that you cannot adjust for DMSO.

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Scholar to James W. MacDonald 63k