Showing : mixomics • reset
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Paired splsda
mixOmics
15 months ago michelafrancesconi8 • 0
3
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Downloading package mixOmics
mixOmics
23 months ago noortje_bloem94 • 0
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1.0k
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bug in block.plsda from mixOmics?
mixOmics
2.3 years ago Lluís Revilla Sancho ▴ 760
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688
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mixOmics with Bioconductor classes
mixOmics
2.3 years ago Lluís Revilla Sancho ▴ 760
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1.4k
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mixOmics 3D scatterplot for individuals not displaying
plotIndiv 3D mixOmics PCA
4.1 years ago Blobby123 • 0
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1.5k
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mixOmics plotIndiv misspecifies the sample groups in legend
mixomics
updated 5.4 years ago by • 0 • written 5.6 years ago by ▴ 60
6 results • Page 1 of 1
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Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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