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Comment: Why is DMRcate not available for Bioconductor version 3.18? by Gordon Smyth 48k
That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…
Comment: Unlog transformed data in DESeq2 by Gordon Smyth 48k
The RUVIII people themselves use limma ( https://doi.org/10.1093/nar/gkz433 ). But please, post your question as a question. That would be …
Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0
Yes I see that. So, to expand, if strong grouping IS seen, then the ```~condition``` approach is not appropriate, as will likely lead to po…
Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0
This seems a very odd response to what seemed to be a very reasonable question
Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0
I'm not using Chat GPT. I've been discussing at length this issue of having multiple samples derived from the same patients with many colle…
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Answer: trying to add SingleR label to Seurat Object fails
Comment: DESeq2 - groups with biological replicates from the same patient
Answer: EdgeR: Exact test and glmQLFTest produce very different results
Answer: limma::voom vs edgeR::voomLmFit - when to use?
A: DSS understanding delta option and posterior probability
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