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Comment: Large logFC but somewhat high FDR by JKim • 0
Well I got duplicate FDRs. For those wondering why there are duplicate adjusted p-values, see [p.adjust BH generates duplicate values][1] …
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by ATpoint ★ 5.0k
Since the donor effect is so clear I assume that a paired analysis within donor is strictly necessary to get DEGs, and therefore one would …
Comment: Large logFC but somewhat high FDR by JKim • 0
forgot to attach some other plots, which may be informative... RLE plot ![enter image description here][1] pvalue distribution ![enter …
Comment: upstream git branches of bioc-release by andres.wokaty ▴ 70
Yes, all packages in https://bioconductor.org/packages/json/3.22bioc/packages.json have a `RELEASE_3_22` branch.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
Can we assume that each package git repo will have a `RELEASE_3_22` branch, even when they had "a build error in release"?
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Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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