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Comment: Rsamtools: how to output base positions on reads
by
Martin Morgan
25k
Can you add to your question to provide a more complete example of the output that you are after? Have you explored the `pileup()` command?
Comment: IHW and correlated covariates
by
Michael Love
33k
hi Nikos,
I have a new problem that would benefit IHW with two ordinal covariates, do you have any thoughts on approaching this while pres…
Comment: Determining number of genes in each module based on color in WGCNA package
by
schum266
•
0
For anyone who might be interested. I was able to figure this out. It's very easy.... just set numericLabels = FALSE. (*sigh*)
```
net = …
Comment: Research fellow in immunology
by
ATpoint
▴
640
Try starting a new R session and then load the package again. If that fails then manually install ellipsis version 0.3.2 or greater.
By the…
Answer: Creating the correct model to account for paired-samples (patient-effect) help n
by
Gordon Smyth
43k
In the limma User's Guide, Section 9.4.1 *Paired Samples* covers paired designs. In the edgeR User's Guide, it is Section 3.4.1.
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Martin Morgan
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Michael Love
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Gordon Smyth
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tcalvo
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