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Comment: SpliceWiz collateData error
by
a.wong
▴ 10
Another common pitfall is using hg38 reference to analyse BAM files aligned to hg19.
Comment: SpliceWiz collateData error
by
a.wong
▴ 10
It is difficult to be sure that matrix is all zeros, as the first and last block of values are IR (IR-ratio based introns) and RI (retained…
Comment: Advice for the analysis of microarray data with limma
by
Sam
• 0
@gordonsmyth Do you have any references for this method? I'd be interested in learning more about this topic. I appreciate any help you can…
Comment: SpliceWiz collateData error
by
chiara.caprioli
• 0
Hi again, while this issue was solved following your suggestions, I am facing another problem once I get my data collated. Specifically, …
Comment: Limma-voom with inverse probability weights
by
jay
• 0
Thanks, `t(t(v$weights)*w)` makes sense! Yes exactly, I use sample weights aka importance weights; so thanks for supporting my doubts. I di…
Votes
Answer: Limma-voom with inverse probability weights
A: Limma-voom with external observation weights
Limma-voom with external observation weights
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
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