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Answer: Changing the sample order in the PCA plot
by
ATpoint
★
1.9k
You have to change the factor levels in the vsd object itself, so `vsd$condition <- factor(as.character(vsd$condition, levels=c("day0", "d…
Comment: ASICS - Include internal standard in analysis
by
Pere
▴
10
Hi Chris,
Unfortunately I have not find any solution to the problem. I tried to change the ppmgrid, making it start at -0.5ppm and includi…
Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
by
Bogdan
▴
660
On another topic, talking about edgeR or limma, any thoughts regarding the computation of the normalization factors as Gordon Smith sugges…
Comment: normalization of ChIP-seq data by using the spike-ins or by using total library
by
Bogdan
▴
660
Thank you. At this moment I have included in the matrix of gene expression only 1 spike-in (let's call it S).
Therefore, is it legit to com…
Comment: question regarding installation of "enrichplot" with BiocManager
by
dehaplessdefeated
•
0
I greatly appreciate it [run 3][1]. R studio has enrichplot installed at this time.
[1]: https://run3freegame.com
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