Recent ...
Replies
Comment: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
by
Giulia
•
0
Hi Rory,
Thank you for your quick reply and advice on the matter.
The following are the MAplots for the analysis using the background=TRU…
Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
by
ATpoint
★
2.4k
I asked the same some years back: https://support.bioconductor.org/p/p134551/#p134561
Comment: FlowSOM with unrelated channels
by
helucro
▴
70
Could you perhaps comment one why you would want to include non-biological "unrelated" channels such as time and event length for clusterin…
Answer: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
by
Rory Stark
★
4.6k
It is unusual to see such a big difference between the two analysis methods, although it is more likely when you have only two replicates d…
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
by
Rory Stark
★
4.6k
You need to call `dba.normalize()` twice, first to establish the normalization calculations, and the second time to retrieve them:
cou…
Votes
Awards
• All
Teacher to
Michael Love
39k
Popular Question to
wt215
•
0
Popular Question to
Malcolm Cook
★
1.6k
Popular Question to
shepherl
3.4k
Popular Question to
Assa Yeroslaviz
★
1.5k
Locations
• All
Germany/Heidelberg/EMBL, just now
Germany, 2 minutes ago
Switzerland, 5 minutes ago
United Kingdom, 5 minutes ago
United States, 6 minutes ago
Germany/Heidelberg/EMBL, just now
Germany, 2 minutes ago
Switzerland, 5 minutes ago
United Kingdom, 5 minutes ago
United States, 6 minutes ago
Traffic: 684 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6