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peptide
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Alternatives to perform peptide identification in Bioconductor version '3.16'?
peptide
peptideidentification
rTANDEM
MSGFplus
Alternatives
updated 2.8 years ago by
shepherl
4.2k • written 2.8 years ago by
vaddanki
▴ 10
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Comment: Highly DE genes but small count difference within conditions
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Comment: Highly DE genes but small count difference within conditions
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Comment: Highly DE genes but small count difference within conditions
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Comment: copy number/LOH for Affy 100K
by
igkryycpinmshzugby
• 0
Hi John For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor. …
Comment: Integration: Paired-end vs healthy single-end from a different source
by
igkryycpinmshzugby
• 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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