Bioconductor PhenoTest

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starallele phenoTest

updated 15 months ago by James W. MacDonald 68k • written 15 months ago by greeshmathulasi1 • 0

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1.3k

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phenoTest

7.5 years ago Damien Croteau-Chonka ▴ 10

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1.7k

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Pathways GO hgu133a hgu95av2 phenoTest Pathways GO hgu133a hgu95av2 phenoTest

10.9 years ago Kostas Kerkentzes ▴ 10

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1.3k

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phenoTest phenoTest

updated 12.1 years ago by James W. MacDonald 68k • written 12.1 years ago by Jon Manning ▴ 90

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1.4k

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Survival phenoTest Survival phenoTest

updated 13.6 years ago by Heidi Dvinge ★ 2.0k • written 13.6 years ago by Adrian Johnson ▴ 330

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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Popular Question to maltethodberg ▴ 180