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R/sql code to find the haplotype data from patient's rsIDs
starallele phenoTest
updated 24 months ago by 68k • written 24 months ago by • 0
1
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1.4k
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Bug in 'gsea' function ('phenoTest' package)
phenoTest
8.2 years ago Damien Croteau-Chonka ▴ 10
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1.8k
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[phenoTest package]: gsea.kegg error with absVals parameter
Pathways GO hgu133a hgu95av2 phenoTest Pathways GO hgu133a hgu95av2 phenoTest
11.6 years ago Kostas Kerkentzes ▴ 10
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1.4k
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phenoTest and variable-wise multiple testing
phenoTest phenoTest
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 90
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1
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1.5k
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cox PH model - KM curve
Survival phenoTest Survival phenoTest
updated 14.3 years ago by ★ 2.0k • written 14.4 years ago by ▴ 330
5 results • Page 1 of 1
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi bioinffun, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to …
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset? by Kevin Blighe ★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be f…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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