Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
phenoTest
•
reset
1
vote
0
replies
1.1k
views
Bug in 'gsea' function ('phenoTest' package)
phenoTest
6.7 years ago
Damien Croteau-Chonka
▴ 10
0
votes
1
reply
1.2k
views
cox PH model - KM curve
Survival
phenoTest
Survival
phenoTest
updated 12.8 years ago by
Heidi Dvinge
★ 2.0k • written 12.8 years ago by
Adrian Johnson
▴ 330
0
votes
2
replies
1.1k
views
phenoTest and variable-wise multiple testing
phenoTest
phenoTest
updated 11.3 years ago by
James W. MacDonald
65k • written 11.3 years ago by
Jon Manning
▴ 90
0
votes
0
replies
1.5k
views
[phenoTest package]: gsea.kegg error with absVals parameter
Pathways
GO
hgu133a
hgu95av2
phenoTest
Pathways
GO
hgu133a
hgu95av2
phenoTest
10.1 years ago
Kostas Kerkentzes
▴ 10
0
votes
0
replies
197
views
R/sql code to find the haplotype data from patient's rsIDs
starallele
phenoTest
updated 5 months ago by
James W. MacDonald
65k • written 5 months ago by
greeshmathulasi1
• 0
5 results • Page
1 of 1
Recent ...
Replies
Comment: Too many significant genes when integrating gtex and tcga
by
ATpoint
★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
Answer: fgsea significant result
by
ATpoint
★ 4.1k
Set a fixed seed before running this. Note that a FDR of 0.25 in fgsea is wildly and overly lenient. See https://support.bioconductor.o…
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
Awards
• All
Popular Question
to
Sam
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
Zainab
• 0
Popular Question
to
Theo
▴ 10
Popular Question
to
gene_bioconductor
▴ 10
Locations
• All
Poland,
1 minute ago
Jerusalem,
12 minutes ago
Sweden,
47 minutes ago
WEHI, Melbourne, Australia,
52 minutes ago
France,
59 minutes ago
Traffic: 404 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6