Bioconductor Phenotest

Showing : phenotest • reset

votes

replies

397

views

starallele phenoTest

updated 16 months ago by James W. MacDonald 68k • written 16 months ago by greeshmathulasi1 • 0

vote

replies

1.3k

views

phenoTest

7.6 years ago Damien Croteau-Chonka ▴ 10

votes

replies

1.7k

views

Pathways GO hgu133a hgu95av2 phenoTest Pathways GO hgu133a hgu95av2 phenoTest

11.0 years ago Kostas Kerkentzes ▴ 10

votes

replies

1.3k

views

phenoTest phenoTest

updated 12.2 years ago by James W. MacDonald 68k • written 12.2 years ago by Jon Manning ▴ 90

votes

1.4k

views

Survival phenoTest Survival phenoTest

updated 13.7 years ago by Heidi Dvinge ★ 2.0k • written 13.7 years ago by Adrian Johnson ▴ 330

5 results • Page 1 of 1

Recent ...

Replies

Comment: Annotation package for Manduca sexta by GA ▴ 10

Thank you!

Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Votes

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

Awards • All