Bioconductor Phenotest

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starallele phenoTest

updated 2.0 years ago by James W. MacDonald 68k • written 2.0 years ago by greeshmathulasi1 • 0

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1.4k

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phenoTest

8.3 years ago Damien Croteau-Chonka ▴ 10

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1.8k

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Pathways GO hgu133a hgu95av2 phenoTest Pathways GO hgu133a hgu95av2 phenoTest

11.7 years ago Kostas Kerkentzes ▴ 10

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1.4k

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phenoTest phenoTest

updated 12.9 years ago by James W. MacDonald 68k • written 12.9 years ago by Jon Manning ▴ 90

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1.5k

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Survival phenoTest Survival phenoTest

updated 14.4 years ago by Heidi Dvinge ★ 2.0k • written 14.4 years ago by Adrian Johnson ▴ 330

5 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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