Bioconductor Platecore

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plateCore plateCore

updated 13.8 years ago by Errol Strain ▴ 40 • written 13.8 years ago by Sancho, Jose ▴ 80

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plateCore plateCore

updated 14.2 years ago by Errol Strain ▴ 40 • written 14.2 years ago by Sancho, Jose ▴ 80

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Annotation plateCore Annotation plateCore

updated 14.3 years ago by Errol Strain ▴ 40 • written 14.3 years ago by Abbhirami Rajagopal ▴ 70

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Comment: modelGeneVarByPoisson error selecting bandwidth automatically by Lluís Revilla Sancho ▴ 730

Yes, the examples run fine. I only get some warnings (I activated that check in my environment): ``` Warning messages: 1: In seq.default(f…

Comment: EnsDb: bad_weak_ptr by Lluís Revilla Sancho ▴ 730

I suspected this. Thanks for the answer, that solution might work! And at least now I understand why this happens (but I wish there would b…

Comment: Research Project - Expanding search funtionality on the GEO database by ATpoint ★ 4.2k

Note that GEOquery is inherently limited to array data, are you aware of that? Generally, the problem is with such plans that it would requ…

Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some by Michael Love 42k

If you have other covariates, you can't compare the counts directly. The batch and score influence the expected counts.

Comment: DESeq2 and shrinkage of log2 fold changes by Michael Love 42k

It is not enabled by default since 2016. The above post was written before that.

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Comment: EnsDb: bad_weak_ptr

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