updated 5.5 years ago by
James W. MacDonald
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written 5.5 years ago by
stephanie.rialle
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Comment: DESeq2 for candidate gene analysis
by
piffelpaff
▴
10
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis
by
Michael Love
43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh.
```
> z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE)
> class(counts(z))
[1] "DelayedMatrix"
att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me.
```
> example(read10xCounts)
rd10xC> # Mocking up some 10X genomics output.
rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
•
0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
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