Showing : posterior pobability • reset
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DSS understanding delta option and posterior probability
posterior pobability statistical test theory
updated 2.9 years ago by 62k • written 2.9 years ago by • 0
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Answer: Not sure what an Asymmetric MA plot means? by ATpoint ★ 2.4k
You asked this here already https://www.biostars.org/p/9558379/ with advise to do more prefiltering and checking normalization with control…
Comment: RUVr batch correction doubling number of DEGs by Zainab • 0
Thanks Michael! This has really helped me put together my analysis!
Comment: Does it make sense to have so many statistically significant gene differentially by Michael Love 39k
Use group in ggplot to connect the pairs.
Answer: DispEsts plot by Michael Love 39k
You have a lot of high dispersion genes, check PCA plots, also count plots for the genes with high mean and high dispersion.
Answer: Correct script for featurecounts in Rsubread by Gordon Smyth 47k
See - https://bioconductor.org/packages/release/workflows/vignettes/RnaSeqGeneEdgeRQL/inst/doc/edgeRQL.html#quantifying-read-counts-for-eac…
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Comment: RUVr batch correction doubling number of DEGs
Comment: RUVr batch correction doubling number of DEGs
Answer: RUVr batch correction doubling number of DEGs
A: LogFC: how do you determine the cutoff for differentially expressed genes?
Confused about design for RNA seq experiment
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