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power
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gwas power calculation for quantitative traits
power
GWAS
written 3.2 years ago by
rajya82
• 0
6
votes
4
replies
1.5k
views
Discrepancy in effect size calculation between ordinary Cohens D and LIMMA
CohensD
power
limma
effectsize
3.7 years ago
MoltenLight
▴ 10
2
votes
1
reply
719
views
Detecting the power in differential expression
POWER
DESEQ2
edger
LIMMA
DIfferential expression
5.0 years ago
Beginner
• 0
0
votes
2
replies
4.8k
views
WGCNA - problems picking a suitable power
WGCNA
pickSoftThreshold
power
RNA-Seq
updated 8.8 years ago by
Peter Langfelder
★ 3.0k • written 8.8 years ago by
mrodrigues.fernanda
▴ 10
4 results • Page
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Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
Paul
• 0
This is the traceback I got after running AddMotifs if this is informative? ``` 23: stop(wmsg("trying to load regions beyond the boundaries…
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
James W. MacDonald
67k
You will probably have to ask the Signac people. I don't know exactly what is going on under the hood for `AddMotif`, but the `EnsDb` seems…
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
Paul
• 0
Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…
Comment: WGCNA with TPM tables
by
ATpoint
★ 4.5k
WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
by
James W. MacDonald
67k
The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…
Votes
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
A: ANOVA-like test with edgeR
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