Showing : GWAS • reset
0
votes
4
replies
402
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
6 months ago Weiqiong • 0
0
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0
replies
471
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
15 months ago Sarah • 0
0
votes
0
replies
478
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
15 months ago helene.ruffieux • 0
0
votes
0
replies
473
views
Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
18 months ago helene.ruffieux • 0
0
votes
0
replies
393
views
gwas power calculation for quantitative traits
power GWAS
2.1 years ago rajya82 • 0
1
vote
2
replies
3.2k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 2.6 years ago by • 0 • written 3.8 years ago by • 0
0
votes
0
replies
696
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
3.5 years ago jiyeon.choi2 • 0
0
votes
3
replies
913
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 4.2 years ago by ▴ 70 • written 4.2 years ago by • 0
0
votes
0
replies
594
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
4.6 years ago pwjeffries • 0
0
votes
1
reply
740
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
4.6 years ago naglemi ▴ 10
1
vote
1
reply
743
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 4.8 years ago by ▴ 70 • written 4.9 years ago by ▴ 10
0
votes
1
reply
770
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 5.0 years ago by ▴ 30 • written 5.0 years ago by ▴ 10
0
votes
0
replies
713
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
5.1 years ago zhu • 0
0
votes
3
replies
962
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 5.2 years ago by ▴ 70 • written 5.2 years ago by ▴ 10
3
votes
4
replies
1.1k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 5.2 years ago by ▴ 70 • written 5.2 years ago by ▴ 10
0
votes
1
reply
747
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
5.2 years ago GENOMIC_region • 0
0
votes
0
replies
953
views
Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
6.2 years ago IV ▴ 30
2
votes
0
replies
1.2k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
7.3 years ago enridomenici ▴ 10
0
votes
0
replies
972
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
8.1 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: LIMMA dupcor() function time issue. by Gordon Smyth 48k
That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …
Comment: Specifying evidence channels in STRINGdb by robynne.braun • 0
Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…
Comment: Problems with FLOWAI by SHASHI • 0
please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA
Comment: DataFrame Construction With Non-standard Column by Hervé Pagès 16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu by swbarnes2 ★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Votes
Answer: Deseq2, enrichGO and ensembl ID
A: LIMMA dupcor() function time issue.
A: LIMMA dupcor() function time issue.
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
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