Showing : GWAS • reset
0
votes
4
replies
1.2k
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
2.1 years ago Weiqiong • 0
0
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0
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989
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Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
2.9 years ago Sarah • 0
0
votes
0
replies
999
views
Job: Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL biostatistics computationalbiology GWAS
2.9 years ago helene.ruffieux • 0
0
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0
replies
925
views
Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
3.1 years ago helene.ruffieux • 0
0
votes
1
reply
914
views
gwas power calculation for quantitative traits
power GWAS
written 3.6 years ago by • 0
1
vote
2
replies
5.1k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.2 years ago by • 0 • written 5.4 years ago by • 0
0
votes
0
replies
1.2k
views
Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
5.0 years ago jiyeon.choi2 • 0
0
votes
3
replies
1.5k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 5.7 years ago by ▴ 70 • written 5.7 years ago by • 0
0
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0
replies
957
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
6.2 years ago pwjeffries • 0
0
votes
1
reply
1.2k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.2 years ago naglemi ▴ 10
1
vote
1
reply
1.2k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 6.6 years ago by ▴ 30 • written 6.6 years ago by ▴ 10
0
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0
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1.1k
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
6.7 years ago zhu • 0
0
votes
3
replies
1.5k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 6.7 years ago by ▴ 70 • written 6.7 years ago by ▴ 10
3
votes
4
replies
1.8k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 6.7 years ago by ▴ 70 • written 6.7 years ago by ▴ 10
0
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1
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1.2k
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
6.8 years ago GENOMIC_region • 0
0
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0
replies
1.3k
views
Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
7.8 years ago IV ▴ 30
2
votes
0
replies
1.6k
views
Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
8.8 years ago enridomenici ▴ 10
0
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0
replies
1.3k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
9.7 years ago Vincent J. Carey, Jr. 6.7k
19 results • Page 1 of 1
Recent ...
Replies
Comment: DeSeq Strategies for run to run Replication by Michael Love 43k
You shouldn't need to run `DESeq` on the test data, or manually compute normalization factors. ``` dds_test <- ... # create object dds_te…
Answer: Feature Counts - potential bug with outfile.jcounts by Wei Shi ★ 3.6k
We have made significant changes to how featureCounts annotates junctions detected in read mapping results. These updates are included in t…
Comment: How to perform batch correction on scRNA-seq with confounding plate effects? by 瑞宏 • 0
I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …
Comment: DiffBind can't find a DAR by Mengjun • 0
Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…
Comment: European Bioconductor Conference 2023 planning by ht • 0
Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…
Votes
C: Annotating HTA 2.0 genes
C: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
A: Annotating HTA 2.0 genes
Answer: Feature Counts - potential bug with outfile.jcounts
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