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GWAS
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72
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Job:
Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
computationalbiology
immunology
GWAS
biostatistics
10 weeks ago
helene.ruffieux
• 0
0
votes
0
replies
133
views
gwas power calculation for quantitative traits
power
GWAS
8 months ago
rajya82
• 0
1
vote
2
replies
1.8k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 15 months ago by
Anna
• 0 • written 2.5 years ago by
solanum
• 0
0
votes
0
replies
342
views
Job:
Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS
lung cancer
functional genomics
eQTL
sequencing
Job
2.1 years ago
jiyeon.choi2
• 0
0
votes
3
replies
524
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 2.8 years ago by
mconomos
▴ 70 • written 2.8 years ago by
ferranpauls10
• 0
0
votes
0
replies
331
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS
CGEN
gxe
3.3 years ago
pwjeffries
• 0
0
votes
1
reply
450
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
3.3 years ago
naglemi
▴ 10
1
vote
1
reply
427
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 3.5 years ago by
mconomos
▴ 70 • written 3.5 years ago by
naglemi
▴ 10
0
votes
1
reply
454
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 3.7 years ago by
zhengx
▴ 30 • written 3.7 years ago by
naglemi
▴ 10
0
votes
0
replies
456
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
3.7 years ago
zhu
• 0
0
votes
3
replies
609
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 3.8 years ago by
mconomos
▴ 70 • written 3.8 years ago by
naglemi
▴ 10
3
votes
4
replies
643
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 3.8 years ago by
mconomos
▴ 70 • written 3.8 years ago by
naglemi
▴ 10
0
votes
1
reply
412
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
3.9 years ago
GENOMIC_region
• 0
0
votes
0
replies
674
views
Job:
BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq
gwas
R
bioconductor
Job
4.9 years ago
IV
▴ 30
2
votes
0
replies
877
views
Job:
Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job
GWAS
genetics
genomics
neuro
Job
5.9 years ago
enridomenici
▴ 10
0
votes
0
replies
723
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
6.8 years ago
Vincent J. Carey, Jr.
6.6k
16 results • Page
1 of 1
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Replies
Comment: performing the differential binding in ChIP-seq
by
ATpoint
★ 1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2
by
Ekta
• 0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Comment: how to make a group to apply the data to CAMERA
by
Akira
• 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
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Gordon Smyth
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andrebolerbarros
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James W. MacDonald
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Guido Hooiveld
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Kevin Blighe
3.5k
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