Showing : GWAS • reset
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Job: Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL computationalbiology immunology GWAS biostatistics
10 weeks ago helene.ruffieux • 0
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133
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gwas power calculation for quantitative traits
power GWAS
8 months ago rajya82 • 0
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1.8k
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Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 15 months ago by • 0 • written 2.5 years ago by • 0
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Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
2.1 years ago jiyeon.choi2 • 0
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3
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524
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GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 2.8 years ago by ▴ 70 • written 2.8 years ago by • 0
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331
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Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS CGEN gxe
3.3 years ago pwjeffries • 0
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450
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
3.3 years ago naglemi ▴ 10
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427
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Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 3.5 years ago by ▴ 70 • written 3.5 years ago by ▴ 10
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454
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Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 3.7 years ago by ▴ 30 • written 3.7 years ago by ▴ 10
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456
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how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq enrichment GWAS
3.7 years ago zhu • 0
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3
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609
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GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 3.8 years ago by ▴ 70 • written 3.8 years ago by ▴ 10
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4
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643
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Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 3.8 years ago by ▴ 70 • written 3.8 years ago by ▴ 10
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
3.9 years ago GENOMIC_region • 0
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Job: BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq gwas R bioconductor Job
4.9 years ago IV ▴ 30
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Job: Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job GWAS genetics genomics neuro Job
5.9 years ago enridomenici ▴ 10
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News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
6.8 years ago Vincent J. Carey, Jr. 6.6k
16 results • Page 1 of 1
Recent ...
Replies
Comment: performing the differential binding in ChIP-seq by ATpoint ★ 1.2k
Cross-posted https://www.biostars.org/p/9524012/#9524012
Comment: Transcript-level differential expression using DESeq2 by Ekta • 0
Yes, i tried that. I used salmon bootstraps also for the same RNAseq data to run Swish and performed the Differential transcript expressio…
Comment: how to make a group to apply the data to CAMERA by Akira • 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq by Bogdan ▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Votes
Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
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