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Showing :
GWAS
•
reset
0
votes
4
replies
402
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium
SNP
gwas
GWASdata
ldblock
6 months ago
Weiqiong
• 0
0
votes
0
replies
471
views
Job:
Postdoc position - Genetic epi/statistical genetics
GWAS
cancer
biomarkers
PRS
15 months ago
Sarah
• 0
0
votes
0
replies
478
views
Job:
Research Associate, statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
biostatistics
computationalbiology
GWAS
15 months ago
helene.ruffieux
• 0
0
votes
0
replies
473
views
Job:
Research Associate, computational/statistical genetics & genomics, MRC Biostatistics Unit, University of Cambridge
molecularQTL
computationalbiology
immunology
GWAS
biostatistics
18 months ago
helene.ruffieux
• 0
0
votes
0
replies
393
views
gwas power calculation for quantitative traits
power
GWAS
2.1 years ago
rajya82
• 0
1
vote
2
replies
3.2k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 2.6 years ago by
Anna
• 0 • written 3.8 years ago by
solanum
• 0
0
votes
0
replies
696
views
Job:
Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS
lung cancer
functional genomics
eQTL
sequencing
Job
3.5 years ago
jiyeon.choi2
• 0
0
votes
3
replies
913
views
GENESIS: ascertainment in GWAS
genesis
fitnullmodel
gwas
ascertainment
updated 4.2 years ago by
mconomos
▴ 70 • written 4.2 years ago by
ferranpauls10
• 0
0
votes
0
replies
594
views
Which R package has a test for a gene by environment interaction using imputed data and a quantitative phenotype?
GWAS
CGEN
gxe
4.6 years ago
pwjeffries
• 0
0
votes
1
reply
740
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
4.6 years ago
naglemi
▴ 10
1
vote
1
reply
743
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS
GWAS
AssocTestMM
updated 4.8 years ago by
mconomos
▴ 70 • written 4.9 years ago by
naglemi
▴ 10
0
votes
1
reply
770
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 5.0 years ago by
zhengx
▴ 30 • written 5.0 years ago by
naglemi
▴ 10
0
votes
0
replies
713
views
how to: enrichment (over representation) analysis of GWAS/QTL data distributed over a genome with GOSEQ
goseq
enrichment
GWAS
5.1 years ago
zhu
• 0
0
votes
3
replies
962
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS
assoctestmm
GWAS
updated 5.2 years ago by
mconomos
▴ 70 • written 5.2 years ago by
naglemi
▴ 10
3
votes
4
replies
1.1k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM
GWAS
GENESIS
assocTestMM
updated 5.2 years ago by
mconomos
▴ 70 • written 5.2 years ago by
naglemi
▴ 10
0
votes
1
reply
747
views
GWAS: access Imputation probabilities: snpStats
gwas
snpstats
GWAS
Imputation
snpStats
5.2 years ago
GENOMIC_region
• 0
0
votes
0
replies
953
views
Job:
BIOINFORMATICIAN I at Brigham and Women's Hospital, Boston, MA, USA
rna-seq
gwas
R
bioconductor
Job
6.2 years ago
IV
▴ 30
2
votes
0
replies
1.2k
views
Job:
Two year postdoc position at Trento, Laboratory of Neurogenomic Biomarkers, Italy
job
GWAS
genetics
genomics
neuro
Job
7.3 years ago
enridomenici
▴ 10
0
votes
0
replies
972
views
News:
gwascat package updated: new features in devel branch
GWAS
genetic epidemiology
SNP
News
8.1 years ago
Vincent J. Carey, Jr.
6.7k
19 results • Page
1 of 1
Recent ...
Replies
Comment: LIMMA dupcor() function time issue.
by
Gordon Smyth
48k
That's ok, but there is nothing to be gained by subsetting 1000 times. It would be better to simply subset 100,000 rows once, although the …
Comment: Specifying evidence channels in STRINGdb
by
robynne.braun
• 0
Also I found prior thread here addressing the same question with response that functionality will be supported someday. This was a few year…
Comment: Problems with FLOWAI
by
SHASHI
• 0
please try this using short path name and keeping your fcs file and wsp file in your local directory https://youtu.be/xLeqE7PNYzA
Comment: DataFrame Construction With Non-standard Column
by
Hervé Pagès
16k
SimpleList is a List derivative and List derivatives in general don't need protection. For example, a GRangesList object (which is also a L…
Answer: Deseq2, how to model design for comparing Mutant mouse at age 14 days versus Mu
by
swbarnes2
★ 1.3k
The Status grouping you show above is good to use if you want to simply compare one subset of samples to another subset. The ~Genotype +…
Votes
Answer: Deseq2, enrichGO and ensembl ID
A: LIMMA dupcor() function time issue.
A: LIMMA dupcor() function time issue.
Answer: Further analysis after limma regression output
A: collapseReplicates in DESeq2
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