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preda
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PREDA shiny Golem issue
PREDAsampledata
PREDA
Biobase
3.1 years ago
Gavin
▴ 20
0
votes
1
reply
983
views
PREDA command does not work
PREDA
PREDA
updated 11.5 years ago by
Valerie Obenchain
★ 6.8k • written 11.5 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
GenomicAnnotationsFromdataframe error
iSeq
PREDA
iSeq
PREDA
11.7 years ago
Guest User
★ 13k
0
votes
4
replies
1.4k
views
PREDA package missing
PREDA
PREDA
updated 11.7 years ago by
Francesco Ferrari
▴ 20 • written 11.7 years ago by
Guest User
★ 13k
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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
xiaofeiwang198266
• 0
Thanks for your reply!
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Hervé Pagès
16k
> I have requested gDNAx developers for a feature request to turn off seqlevelsStyle(txdb) Yes, that's the right course of action. `seqlev…
Comment: ISO a solution to rank-order introns by transcript
by
mat149
▴ 80
Hey, In revisiting this question, the following code works for the '+' strand. I am having issues with demarcating intron rank by transcri…
Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
by
Gordon Smyth
52k
Since the intra-block correlation is negative, it would be best to remove `block` from the model. My experience with genetically identical…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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