Showing : Biobase • reset
0
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261
views
Job: PhD-position in bioinformatics / computational biology
Epigenomics NGS Aging Biobase
updated 11 weeks ago by 42k • written 12 weeks ago by • 0
3
votes
3
replies
518
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array BiocGenerics BiocParallel Biobase
4 months ago jacques.imbert • 0
1
vote
4
replies
789
views
Help for SeqVarData function
Biobase SeqVarTools
12 months ago pjuge • 0
2
votes
4
replies
1.7k
views
Failed to install Biobase
GSVA Biobase
updated 17 months ago by 67k • written 17 months ago by • 0
0
votes
2
replies
1.2k
views
Automatically disconnecting database connections stored within an S4 object
DBI S4 Biobase
updated 2.0 years ago by 16k • written 2.1 years ago by ▴ 70
0
votes
1
reply
3.5k
views
NMF installation with current R version
NMF Biobase
updated 2.3 years ago by 4.0k • written 2.3 years ago by • 0
2
votes
1
reply
1.9k
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase SingleCellData seurat SingleCell
updated 2.6 years ago by 67k • written 2.6 years ago by • 0
2
votes
3
replies
2.4k
views
Suppress messages from ALL calls to load package
suppressPackageStartupMessages Biobase
updated 2.8 years ago by ★ 4.4k • written 2.8 years ago by ▴ 210
2
votes
0
replies
728
views
PREDA shiny Golem issue
PREDAsampledata PREDA Biobase
2.8 years ago Gavin ▴ 20
0
votes
2
replies
1.2k
views
Gene expression in R
limma edgeR Biobase GeneExpression
3.0 years ago sogol.bouyeh • 0
3
votes
4
replies
2.3k
views
R session aborted: prcomp
Biobase stats
updated 3.4 years ago by ★ 4.0k • written 3.5 years ago by • 0
0
votes
0
replies
964
views
Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
3.5 years ago Daniel Brewer ▴ 100
0
votes
0
replies
1.0k
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
3.7 years ago Daniel Brewer ▴ 100
0
votes
3
replies
1.5k
views
ReadAffy does not take into account parameter sampleNames with phenoData object
affycoretools ReadAffy Biobase phenoData affy
updated 3.7 years ago by 67k • written 3.7 years ago by • 0
0
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0
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791
views
Job: Postdoctoral Associate position to study hematopoietic neoplasms using advanced single-cell multi-omics technologies
Biobase
3.7 years ago NamLab • 0
0
votes
0
replies
782
views
Job: Data analyst position to study hematopoietic neoplasms via single-cell multi-omics
Biobase
3.7 years ago NamLab • 0
0
votes
1
reply
812
views
Calculations (averaging and normalization) with expressionset
RTCA Biobase Bioconductor expressionset
updated 3.8 years ago by 67k • written 3.8 years ago by • 0
1
vote
0
replies
885
views
Job: Computational Biologist at Denali Therapeutics
Biobase biomarker neuroscience biotech
3.8 years ago sandmann.t ▴ 70
1
vote
3
replies
1.0k
views
After the Support Site upgrade: how can I order posts by creation (not reply) time?
SupportSiteUI Biobase
3.9 years ago Axel Klenk ★ 1.0k
4
votes
8
replies
2.6k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma biobase ExpressionSet
updated 4.4 years ago by 51k • written 4.4 years ago by • 0
0
votes
0
replies
964
views
No methods found in package Biobase for request: read.AnnotatedDataFrame
software error biobase Iranges ArrayExpressHTS
4.5 years ago Ed Siefker ▴ 230
0
votes
3
replies
1.9k
views
When applying rma to featureset get error: 'package' must be of length 1
oligo biobase GEOquery
updated 4.9 years ago by 67k • written 4.9 years ago by ▴ 20
3
votes
3
replies
2.0k
views
Is there a way to save and open an expression set?
biobase
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by ▴ 20
0
votes
5
replies
2.3k
views
Install a custom CDF file
makecdf RMA annotation biobase GEOquery
updated 5.2 years ago by 67k • written 5.2 years ago by • 0
2
votes
4
replies
2.6k
views
error: namespace Loading DESeq2
deseq2 error namespace biobase
updated 5.7 years ago by 67k • written 5.7 years ago by • 0
0
votes
2
replies
1.3k
views
GEOQuery bug, NCBI or package?
geoquery ncbi geo biobase
5.8 years ago cschot3 • 0
4
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8
replies
2.5k
views
ALL dataset, correct syntax using the exprs call?
ALL bioconductor biobase exprs
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
2
votes
2
replies
1.3k
views
aaMap Import "Not Available"
bioconductor biobase aaMap
updated 6.1 years ago by ▴ 20 • written 6.1 years ago by • 0
5
votes
7
replies
1.7k
views
Difficulty extending ExpressionSet
biobase expressionset eset
updated 6.1 years ago by 25k • written 6.1 years ago by ▴ 20
2
votes
2
replies
4.7k
views
AnnotatedDataFrame is not a defined class
annotatedDataFrame R Biobase
9.8 years ago • updated 6.1 years ago nonCodingGene ▴ 10
2
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10
replies
2.0k
views
Am I on the right tracks with a 3 factor design in Limma?
r limma design matrix biobase
updated 6.2 years ago by 51k • written 6.2 years ago by • 0
2
votes
2
replies
2.6k
views
Error in log2(exprs(eSet)) : non-numeric argument to mathematical function
microarray biobase
6.2 years ago charlesgwellem ▴ 10
8
votes
2
replies
3.3k
views
exprs function - clash with dplyr
exprs dplyr Biobase
6.3 years ago Wolfgang Huber ★ 13k
1
vote
3
replies
1.6k
views
Boxplot and Identification of DEG
limma biobase geoquery
updated 6.8 years ago by ★ 28k • written 6.8 years ago by ▴ 30
2
votes
3
replies
1.9k
views
GEOquery problem in calling the function in Rstudio
R software error biobase geoquery
updated 7.1 years ago by 67k • written 7.1 years ago by • 0
4
votes
3
replies
1.3k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays expressionset biobase annotation brainarray
updated 7.2 years ago by 67k • written 7.2 years ago by • 0
0
votes
1
reply
1.2k
views
Problem Subsetting ExpressionSet
expressionset biobase bioconductor
updated 7.3 years ago by 67k • written 7.3 years ago by ▴ 60
1
vote
2
replies
3.3k
views
how to update feature data with different dimensions in expressionSet?
biobase eSet expressionSet
updated 7.9 years ago by 25k • written 7.9 years ago by ★ 4.1k
6
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13
replies
2.2k
views
Comparison of Column of AnnotatedDataFrame
biobase AnnotatedDataFrame
7.9 years ago Dario Strbenac ★ 1.5k
0
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4
replies
1.4k
views
`exprs<-` Allows setting assay data matrix size that doesn't match se.exprs
Biobase
updated 8.0 years ago by ★ 6.5k • written 8.1 years ago by • 0
1
vote
2
replies
2.6k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.5 years ago by 51k • written 8.5 years ago by • 0
2
votes
2
replies
8.3k
views
Convert Expression Set into a Matrix or Data Frame
microarray biobase affy R
updated 8.6 years ago by ▴ 760 • written 8.6 years ago by • 0
0
votes
2
replies
1.5k
views
Help with annotating eset (Affy Arrays)
Biobase annotationdbi affy microarray
8.8 years ago rumroses12 • 0
2
votes
5
replies
4.0k
views
How to use t.test to select best features out of multiple features?
microarray biobase feature selection t.test R
updated 9.0 years ago by ▴ 830 • written 9.0 years ago by ▴ 10
1
vote
3
replies
3.2k
views
How to use expression set object to select genes using different gene selection methods
microarray biobase geoquery
updated 9.0 years ago by ▴ 830 • written 9.0 years ago by ▴ 10
0
votes
1
reply
3.2k
views
Excluding columns of phenoData of ExpressionSet Data in R
microarray biobase expresiondataset r
9.0 years ago floodking • 0
0
votes
1
reply
5.9k
views
pvca error (Error in Data$variables : $ operator is invalid for atomic vectors)
pvca biobase
updated 9.1 years ago by • 0 • written 9.4 years ago by • 0
4
votes
6
replies
5.5k
views
Proper way to build phenoData object?
limma affy biobase
updated 9.6 years ago by ★ 4.1k • written 9.6 years ago by ▴ 10
1
vote
3
replies
2.5k
views
Error installing Biobase on R 3.1.2
biobase
updated 9.6 years ago by ★ 2.1k • written 9.6 years ago by • 0
0
votes
2
replies
1.4k
views
How to Represent Data from Various Different Assays in a Single Class?
biobase
updated 9.7 years ago by ★ 1.1k • written 9.7 years ago by ▴ 20
50 results • Page 1 of 1
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Comment: SingleR Label.Ont by Stepah • 0
[Aussie Play][1] cares about its Australian players by offering a safe and secure gaming experience where there is never a dull moment. The…
Comment: ensemblVEP deprecation and how to reproduce by Vincent J. Carey, Jr. 6.7k
What aspect of ensemblVEP are you looking for? The vignette https://bioconductor.org/packages/release/bioc/vignettes/VariantAnnotation/in…
Answer: Help with design matrix for RNA-seq data using edgeR by Gordon Smyth 51k
This forum is intended to help with software usage and syntax rather than to answer research questions, and your question is a definitely a…
Answer: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
DESeq2 has a way of fixing the reference pseudo-sample used for normalization. In estimateSizeFactors man page, you will see an argument g…
Comment: [DESeq2] Normalization of External Test Dataset for Machine Learning (ML) Applic by Michael Love 42k
Sorry - I requested this to be posted here, I will answer.
Votes
Answer: Help with design matrix for RNA-seq data using edgeR
Answer: Should tSNE from biol. replicates look alike?
Answer: Should tSNE from biol. replicates look alike?
Comment: fgsea stuck in an infinite loop in the middle of the run
Answer: Empty Results from champ.DMP Despite Expected Output
Awards • All
Scholar to James W. MacDonald 67k
Popular Question to Matthew Thornton ▴ 380
Popular Question to ZheFrench ▴ 60
Popular Question to Gordon Smyth 51k
Popular Question to erik.burchard • 0
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