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Answer: EnrichGO not working with db created from annotationhub by Lucía • 0

I've gone through my code and I'm pretty sure the issue is not the code, but that some gene IDs (all the ones that start with LOC) are just…

Comment: DiffBind GreyListChIP error: Error: BiocParallel errors by ksong • 0

Hi Rory, Thank you for your reply! Here is the my `sessionInfo()`: Please let me know what you think. I really appreciate your help! …

Comment: EnrichGO not working with db created from annotationhub by Lucía • 0

I used the gtf file from ncbi Here: https://www.ncbi.nlm.nih.gov/assembly/GCF_900626175.2/ Everything was taken from there

Comment: EnrichGO not working with db created from annotationhub by Lucía • 0

I don't understand why they don't match. I got the gtf and fasta from the ncbi website, the cs10 genome assembly, which is the same as that…

Comment: EnrichGO not working with db created from annotationhub by Guido Hooiveld ★ 3.2k

No, basically what is meant is that your input ids should match with those in the `OrgDb`. Also your significant genes should be *part of* …

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Answer: Use MulticoreParam under BatchtoolsParam

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