Showing : proActiv • reset
0
votes
0
replies
320
views
Filtering Steps for proActiv Analysis
Transcriptomics proActiv
14 months ago LuciaNhu • 0
0
votes
0
replies
487
views
proActiv-promoter analysis
proActiv Transcriptomics
17 months ago wang.xiangyu • 0
0
votes
0
replies
691
views
proActiv - Error in estimateSizeFactorsForMatrix when using the proActiv function
proActiv error estimateSizeFactorsForMatrix
2.2 years ago Chris • 0
1
vote
1
reply
1.1k
views
Understanding proActiv promoter identification
proActiv
updated 5.0 years ago by ▴ 60 • written 5.0 years ago by ▴ 10
4
votes
1
reply
1.4k
views
proActiv: No major promoter when internal promoters are strong
proActiv
updated 5.2 years ago by ▴ 60 • written 5.2 years ago by ▴ 10
5 results • Page 1 of 1
Recent ...
Replies
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Awards • All
Popular Question to Stephanie M. Gogarten ▴ 890
Autobiographer to Frances Turner ▴ 20
Popular Question to maltethodberg ▴ 180
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
United States, just now
United States, 26 minutes ago
University of Washington, 48 minutes ago
United States, 51 minutes ago
United States, 1 hour ago
Traffic: 1019 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6