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Comment: (Why) do limma's confidence intervals depend on topTable's p.value argument?
by
sandmann.t
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70
Thank you so much for the fast reply and the immediate fix!
Answer: (Why) do limma's confidence intervals depend on topTable's p.value argument?
by
Gordon Smyth
52k
Thanks for the reproducible example. Definitely a bug. Should not depend on `p.value`. The CIs with `p.value=1` are correct and those with …
Answer: muffz.plot2
by
James W. MacDonald
68k
The help page for `mfuzz.plot2` says
```
colo color palette to be used for plotting. If the color argument remains empty, the
…
Comment: Feedback needed on new user-friendly BED file tool
by
James W. MacDonald
68k
This post does not fit the theme of this forum.
Comment: BiocManager::install() doesn't work
by
shepherl
4.2k
I'm not able to reproduce this yet. Can you provide your `sessionInfo()` and also what is the output of `BiocManager::repositories()` and…
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