Showing : protein modelling • reset
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Job: Postdoctoral Fellow in Sars-CoV-2 genomics and transcriptomics @ Paul-Ehrlich-Institute, Germany
rna-seq phylogenetics protein modelling single-cell sequencing Job
2.7 years ago • updated 2.6 years ago liam.childs • 0
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Comment: Sudden error with KEGG analysis using gometh by James W. MacDonald 62k
For KEGG, yes. You previously couldn't get results, and now you can, so by definition I would expect differences. As for GO, the only chang…
Comment: Sudden error with KEGG analysis using gometh by pedro-marra ▴ 10
I updated the packages that generate the KEGG tables (and also GO tables) and the tables were really different from what I had previously g…
Comment: Sudden error with KEGG analysis using gometh by pedro-marra ▴ 10
I updated the packages that generate the KEGG tables (and also GO tables) and the tables were really different from what I had previously g…
Comment: Doubt about expression data as well as assay by pmadrigal • 0
Hi Kritikaverma2707, I don't know about the `GEOquery` package, but if you want to use Gene Expression Atlas in Bioconductor the `Expressio…
Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k
If you have an index file (.bai) file that is older than its corresponding .bam file, it need to be re-indexed. One way to deal with this …
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GSVA: questions about the bootstrap p-value
Comment: Multifactorial Design for DESEQ2
Answer: Multifactorial Design for DESEQ2
Use scran's normalization by deconvolution for each individual sample or over all samples
A: Deseq2: RNA-seq and Negative binomial distribution
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Popular Question to James W. MacDonald 62k
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Teacher to Mike Smith ★ 6.0k
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