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Comment: When doing differential methylation using the sesame package, seems to only go by ramiro.barrantes ▴ 10

Thank you Luís, I just did put it's just: KYCG_plotVolcano(results,label_by="gene_name",alpha=0.01) (if I understand what you wanted), but …

Comment: When doing differential methylation using the sesame package, seems to only go by Lluís Revilla Sancho ▴ 730

Could you post the code to generate the first volcano? It seems you expect the results of testEnrichment to be like a volcano, why do you e…

Comment: Cannot download GEOmetadb sqlite file by Pablo • 0

I checked and the fixed in the developer version from Github. You can install it with remote: remotes::install_github("https://github.…

Comment: In the sesame package, what does the estimate output mean from testEnrichment() by ramiro.barrantes ▴ 10

Thank you very much for this! Makes sense. Still so much to learn about this.

Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by Yang Liao ▴ 440

Thank you for the additional information! We are currently developing a significantly improved version of `Sublong`. The older version may …

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Answer: object 'hdac_targets' not found

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