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Comment: Diffbind "No genome detected"
by
James W. MacDonald
64k
What happens if you do this:
```
library(BSgenome.Mmusculus.UCSC.mm10)
seqlevelsStyle(Mmusculus) <- "NCBI"
```
And then follow Rory's sugg…
Comment: locateVariant from VariantAnnotation returns wrong results
by
James W. MacDonald
64k
You can certainly do that, but it's extra unnecessary work, as the rest of the cache will already be correctly populated. You only need to …
Comment: Ensembl down???
by
James W. MacDonald
64k
What are the mouse IDs? There is an `Orthology.eg.db` package that can be used to map mouse NCBI Gene IDs to human, and you can use the hum…
Comment: Help with model.matrix and creating the right contrast matrix for limma
by
rober204
•
0
Hi Gordon,
I was hoping for clarification on your comment, I don't understand what is happening exactly in your script above.
Does this…
Comment: Diffbind "No genome detected"
by
rebeccadistefano8
•
0
Hi :)
Were you able to solve the problem? I am experiencing the same problem right now ..
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