updated 6.5 years ago by
Matthew McCall
▴
830
•
written 6.8 years ago by
D.J.Coulson2
•
0
0
votes
1
reply
1.2k
views
Recent ...
Replies
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup.
Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★
5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Awards
• All
Commentator to
sina.nassiri
▴
130
Popular Question to
Hervé Pagès
16k
Popular Question to
jared.andrews07
▴
30
Popular Question to
shepherl
4.2k
Locations
• All
Seattle, WA, United States, 1 hour ago
The Netherlands, 1 hour ago
Pakistan, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 2 hours ago
Seattle, WA, United States, 1 hour ago
The Netherlands, 1 hour ago
Pakistan, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 2 hours ago
Traffic: 530 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6