Bioconductor Qrqc

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qrqc qrqc

updated 12.5 years ago by Thomas Girke ★ 1.7k • written 12.5 years ago by Sang Chul Choi ▴ 230

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GO qrqc ASSIGN GO qrqc ASSIGN

12.5 years ago Sang Chul Choi ▴ 230

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qrqc BiocInstaller qrqc BiocInstaller

12.5 years ago Dan Tenenbaum ★ 8.2k

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qrqc BiocInstaller qrqc BiocInstaller

12.5 years ago Sue Jones ▴ 10

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qrqc qrqc

updated 12.5 years ago by James W. MacDonald 67k • written 12.5 years ago by Sang Chul Choi ▴ 230

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qrqc BiocInstaller qrqc BiocInstaller

updated 12.7 years ago by Dan Tenenbaum ★ 8.2k • written 12.7 years ago by NDowell ▴ 20

6 results • Page 1 of 1

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

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Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

Awards • All

Scholar to Haibo Liu ▴ 20