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Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 1 day ago by • 0 • written 2.3 years ago by • 0
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Can we use rlog or vst data values in limma for differential expression analysis?
DESeq2 limma Normalization R
updated 5 days ago by 47k • written 6 months ago by ▴ 20
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Comment: How to update a package at Bioconductor by ma79 • 0
thanks, just informed the original maintainer to send an email.
Comment: Error: biomaRt has encountered an unexpected server error. by Mike Smith ★ 6.0k
Unfortunately, the BioMart LDS functionality have been flaky for a while now e.g. https://support.bioconductor.org/p/9143401/ , https:/…
Comment: Use with_go along with other filters in getBM function by Mike Smith ★ 6.0k
Hi @rubbit0, I'm not sure I understand what you're trying to do. Do you have a long list of Ensembl Gene IDs and you're trying to select …
Comment: Adjusting for baseline when having longitudinal data, mixed model and no treat by Anna ▴ 20
Dear Gordon, these are my metadata. As you see some subject are missing for timepoint 1 Subject Timepoint 1 ID1 Baselin…
Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10
Sure, noted.
Votes
Dispersion plot -Interpretation -DESeq2
Answer: Dispersion Estimates and MA plots
DESeq2: When to split multiple group samples for 'more' accurate sizefactors, dispersions etc.
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
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