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Job: Bioinformatics Developer / Computational Biologist
bioinformatics rna-seq shiny apps R algorithm development Job
11 months ago mmartin ▴ 20
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Comment: Understanding output of Negative Binomial in DESeq2 by swbarnes2 ▴ 850
Cross posted at Biostars: https://www.biostars.org/p/9490151/
Comment: error: cannot execute 'f951': execvp: No such file or directory when downloading by ATpoint ▴ 840
What is the output of `which f951`?
Comment: At least one covariate is confounded with batch! Please remove confounded covari by NewBioInfo • 0
Thank you James for your response. I tried `limma` and seems like my data matrix was valid for full rank. >library(limma) >nonEst…
Comment: ggtree install by bjarke ▴ 10
Excellent! Many thanks Mike.
Answer: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k
The issue you are having is the same as trying to solve this equation: ``` 3 = y + x ``` There are infinite values of x and y for …
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Answer: Effect size using likelihood ratio test in DESeq2
Comment: ggtree install
Answer: Warning messages on Apple M1 BigSur
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
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Popular Question to James W. MacDonald 58k
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