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Comment: RSEM - tximport; where is effective_length information used? Implications for sc by Kelen • 0

Perfect, thanks!

Comment: Confused about the CPM and TMM normalization in edgeR by Mohamed • 0

Thanks a lot.

Comment: Confused about the CPM and TMM normalization in edgeR by Mohamed • 0

Sorry for misunderstanding. What I meant was that there is always two option of using cpm on DGElist as shown in my above codes: Option 1:…

Answer: Number of rows in DESeq2 output (.csv) is not the same as number of rows in the by Jamie • 0

I think I found the problem, DESeq2 or R could not deal with 5' and 3' or mentionings of commas in the gene names, so after conversion to '…

Comment: Number of rows in DESeq2 output (.csv) is not the same as number of rows in the by Basti ▴ 330

Are you sure you checked the right file ? There is no reason for `as.data.frame(res)` to add lines. please check `library(readr); deseq2res…

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Comment: Error while running DESeq2

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