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sigpathway
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master gene list for pathway analysis
pathway analysis
sigpathway
Genesets_EntrezGeneIDs.RData
3.6 years ago
maria
• 0
0
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4
replies
2.1k
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PANTHER in R.... Gene lists in sigPathway?
sigPathway
sigPathway
10.0 years ago
Voke AO
▴ 760
0
votes
2
replies
1.5k
views
help in downloading some packages.
goTools
sigPathway
topGO
goTools
sigPathway
topGO
updated 11.6 years ago by
Michael Dondrup
▴ 550 • written 11.6 years ago by
Veerendra GP
▴ 100
0
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0
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686
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computer out of memory when using sigpathway
Microarray
Annotation
sigPathway
Microarray
Annotation
sigPathway
12.0 years ago
山中程
▴ 10
0
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0
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567
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sigpathway pheno object
sigPathway
sigPathway
12.9 years ago
Adrian Johnson
▴ 330
0
votes
0
replies
576
views
sigPathway on Agilent data
sigPathway
sigPathway
14.0 years ago
Srinivas Iyyer
▴ 600
0
votes
3
replies
590
views
How can I make genesets for sigpathway
sigPathway
sigPathway
updated 14.2 years ago by
James W. MacDonald
59k • written 14.2 years ago by
Srinivas Iyyer
▴ 600
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Comment: how to make a group to apply the data to CAMERA
by
Akira
• 0
Thank you so much for your quick answer!! I will look into them! I appreciate your kind support.
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
I am asking the question because we have two sets of ChIP-seq data for a histone mark (lets' say H3K4me1) that were generated with : <> an…
Comment: performing the differential binding in ChIP-seq
by
Bogdan
▴ 640
Thank you. Yes, DiffBind might be a good choice shall we have replicates per sample. Another choice is MA-norm2. Any other well-tested sug…
Comment: Error using read.ilmn and neqc
by
Gordon Smyth
45k
I edited the title of your question to be more specific.
Answer: Using limma to read Illumina HT-12 v4 data
by
Gordon Smyth
45k
It seems clear that you haven't exported the correct intensity data from GenomeStudio, and I think you recognize that yourself in your ques…
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Answer: how to make a group to apply the data to CAMERA
Answer: how to make a group to apply the data to CAMERA
Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
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