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Comment: Using both voom and removeBatchEffect, will they double adjust the data or is it
by
sukeshinik5
• 0
Thank you so much for the response and for the development of such crucial functions: voom() and removeBatchEffect(). I have factorized t…
Answer: Cannot connect to annotationhub server
by
Mishaal Irfan
• 0
> AnnotationHub::getAnnotationHubOption("CACHE") [1] "C:\\Users\\Administrator\\AppData\\Local/R/cache/R/AnnotationHub" > library(Annotati…
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
by
Gordon Smyth
51k
The primary purpose of the voom() function is to compute precision weights for the downstream differential expression analysis. vooma() als…
Comment: limma comparison for small sample size and how to get covariance matrix
by
jiachengd
• 0
Thank you very much for your rapid response. Your answer makes a lot sense to me. I check the dimension reduction plot again using `limma::…
Answer: Deseq2 design matrix
by
James W. MacDonald
66k
The error is telling you that the contrast elements you specify are not in `resultsNames(dds)`. You need to choose contrast elements that a…
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Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: DESeq2 - vst() - log2FC - no replicates
Answer: Warning message when running limma with covariates
Answer: Warning message when running limma with covariates
Comment: Limma with covariates
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