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Comment: Highly DE genes but small count difference within conditions
by
Michael Love
42k
TPM is not a robust scaling method and can be influenced by changes in global distribution. What do you get with an MA plot. Can you high…
Comment: Highly DE genes but small count difference within conditions
by
bioshot.com
• 0
Hello Michael, thanks for your answer. Yes, I have only 3 samples :(. Dropping sex would remove those genes but at the same time does not i…
Answer: Highly DE genes but small count difference within conditions
by
Michael Love
42k
Could be due to controlling for sex. You have only three samples? Dropping sex would likely remove such genes as marginally you don't se…
Comment: How to control batch effect if Group and batch are same?
by
earntodiessaz
• 0
These are the types of games that can be found at **[lol beans][1]**. To the fullest extent possible, do it. Before engaging in activities …
Comment: Unevaluated error in ChIPQC combined with BiocParallel
by
earntodiessaz
• 0
Playing video games online at **[Slope][1]** is one of the ways that we get to show off our muscles to all of our new friends that we have …
Votes
GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Comment: Convert HGVS Representation back to Reference Genome Coordinates
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