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Comment: cellCounts() function floating point error
by
J-E
• 0
Thanks for your patience. There was an object 'cellCounts' in my workspace that was masking the most updated function from Rsubread 2.10.4.…
Comment: converting position from '-' strand to '+' strand
by
analeonpalacio
▴ 10
Hi Hervé, Thanks for the explanation. I am a bit confused about the conventions used by Ensembl. In some cases (insertions), the coordinate…
Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq)
by
Basti
▴ 330
Could you share an example of your dataset( `dput(...)`) ? I tried with a random ExpressionSet and `names(p(Data(dataset))[1] <- "New_VAR"`…
Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq)
by
jogugil
• 0
names(pData(microarray))[1]<- "NEW_VAR" It doesn't work, it gives the following error: invalid (NULL) left side of assignment you canno…
Answer: Can't Install ensembldb and EnsDb.Hsapiens.v86
by
elmfinds
• 0
Thank you mbk0asis and Johannes! Installing png solved my issue. I appreciate your help!
Votes
how do singleton samples contribute to dispersion estimate in DESeq2?
Answer: Combine GRanges(List) to a single GRanges with unified breakpoints
Answer: Combine GRanges(List) to a single GRanges with unified breakpoints
Comment: RSEM - tximport; where is effective_length information used? Implications for sc
A: Appropriate explanation of the methodology behind arrayWeights function from lim
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