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limma technical repeat correction
limma
lmer
duplicateCorrelation
technicalrepeats
8 hours ago • updated 3 hours ago
john
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Comment: Samples used for network inference in RegEnrich
by
A.Barden
▴ 10
Thanks very much
Answer: Samples used for network inference in RegEnrich
by
Weiyang
▴ 20
Hi, Thanks for your interest in using RegEnrich. In the network inference step, RegEnrich uses the whole dataset you provided. If you wante…
Answer: qvalue density function error
by
James W. MacDonald
67k
It's likely that `stats::density.default` got masked by a package that you loaded, and now the masking `density` function is being called, …
Comment: limma technical repeat correction
by
john
• 0
Hi Gordon, Thank you very much for the prompt response. If i understand correctly, wouldnt this remove the need to use duplicateCorrelat…
Answer: Analysis of 2*4 factorial design
by
Gordon Smyth
51k
This is covered by Section 9.5 of the limma User's Guide. The analysis with a single-factor is much better. Your definition of A2 vs A1 …
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Answer: Samples used for network inference in RegEnrich
Answer: Samples used for network inference in RegEnrich
Comment: Zero intra-block correlation in RRBS analysis using voomLmFit with block
Differential expression analysis starting from TPM data
Answer: How to identify top most variable genes from log2 normalized data?
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