Bioconductor Trigger

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1.2k

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trigger trigger

updated 13.5 years ago by Michael Lawrence ★ 11k • written 13.5 years ago by Paul Shannon ★ 1.1k

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1.7k

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affy affyio trigger affy affyio trigger

updated 16.0 years ago by cstrato ★ 3.9k • written 16.0 years ago by Germain Paimparay ▴ 10

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1.2k

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CGH trigger CGH trigger

updated 13.6 years ago by Steve Lianoglou ★ 13k • written 13.6 years ago by Noemi Andor ▴ 100

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1.1k

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PROcess trigger PROcess trigger

updated 19.3 years ago by Peter Dalgaard ▴ 20 • written 19.4 years ago by Tae-Hoon Chung ▴ 180

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1.3k

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Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess

updated 10.2 years ago by Solanki, Anisha ▴ 60 • written 10.2 years ago by Antti Honkela ▴ 50

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1.3k

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GUI trigger GUI trigger

updated 19.2 years ago by James W. MacDonald 65k • written 19.2 years ago by Betty Gilbert ▴ 50

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1.0k

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trigger parallel processing multicore

updated 9.5 years ago by Valerie Obenchain ★ 6.8k • written 9.5 years ago by affennacken • 0

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1.1k

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GUI trigger GUI trigger

updated 19.2 years ago by stefano iacus ▴ 430 • written 19.2 years ago by Betty Gilbert ▴ 50

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1.1k

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GUI trigger GUI trigger

updated 19.1 years ago by stefano iacus ▴ 430 • written 19.1 years ago by David Williamson ▴ 10

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2.1k

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Cancer GenomicRanges trigger Cancer GenomicRanges trigger

updated 10.7 years ago by Valerie Obenchain ★ 6.8k • written 10.7 years ago by Dan Du ▴ 210

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1.2k

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cdf probe trigger cdf probe trigger

updated 21.5 years ago by rgentleman ★ 5.5k • written 21.5 years ago by Jens Vilstrup Johansen ▴ 20

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2.4k

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RNASeq Cancer trigger RNASeq Cancer trigger

10.2 years ago Anna Esteve Codina ▴ 20

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1.0k

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limma trigger limma trigger

19.2 years ago Pita ▴ 120

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932

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Annotation Cancer lumiMouseV1 lumi trigger Annotation Cancer lumiMouseV1 lumi trigger

17.0 years ago Simon Lin ▴ 270

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958

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Proteomics trigger rTANDEM Proteomics trigger rTANDEM

11.4 years ago Frederic Fournier ▴ 40

15 results • Page 1 of 1

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Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k

Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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