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Showing :
parallel
•
reset
0
votes
0
replies
204
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
7 months ago
ZheFrench
▴ 40
0
votes
1
reply
416
views
Running limma in parallel
parallel
R
limma
EWAS
updated 11 months ago by
Gordon Smyth
47k • written 11 months ago by
Lorenzo
• 0
3
votes
4
replies
806
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel
R
DiffBind
updated 14 months ago by
Rory Stark
★ 4.6k • written 17 months ago by
eggrandio
• 0
0
votes
1
reply
833
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 2.1 years ago by
Rory Stark
★ 4.6k • written 2.1 years ago by
Victor
• 0
7
votes
4
replies
1.0k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 2.6 years ago by
Martin Morgan
25k • written 2.6 years ago by
gabriel.hoffman
▴ 90
0
votes
1
reply
307
views
Using multiple cores SCTensor package
SCTensor
Single Cell RNA Seq
Parallel
3.2 years ago
ieuangw
• 0
0
votes
4
replies
1.0k
views
DESeq2 using many cores despite parallel = FALSE
deseq2
parallel
updated 3.3 years ago by
Michael Love
39k • written 3.3 years ago by
symbiologist
• 0
6
votes
12
replies
1.1k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
4.0 years ago
foehn
▴ 80
0
votes
0
replies
830
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
4.9 years ago
genomic8328
▴ 10
0
votes
1
reply
607
views
DiffBind count warning
diffbind
parallel
updated 5.0 years ago by
Rory Stark
★ 4.6k • written 5.0 years ago by
ghosos
• 0
1
vote
5
replies
1.7k
views
DiffBind does not run in parallel
diffbind
parallel
biocparallel
updated 5.0 years ago by
Rory Stark
★ 4.6k • written 5.1 years ago by
eggrandio
• 0
3
votes
3
replies
1.2k
views
BiocParallel: zombie processes on FORK cluster
biocparallel
parallel
updated 5.1 years ago by
Martin Morgan
25k • written 5.1 years ago by
assaron
▴ 240
1
vote
0
replies
913
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
5.1 years ago
s.munster
▴ 40
2
votes
10
replies
1.6k
views
Correct way to load a package inside bplapply function
parallel
biocparallel
5.5 years ago
felix.ernst
• 0
2
votes
3
replies
2.1k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel
parallel
5.7 years ago
davide risso
▴ 920
1
vote
1
reply
1.2k
views
sva: Parallel execution of sva()-function fails.
sva
parallel
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
maltethodberg
▴ 140
4
votes
1
reply
947
views
Parallel Join Excessively Slow
biocparallel
curatedmetagenomicdata
parallel
dplyr
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
Lucas Schiffer
▴ 240
1
vote
6
replies
1.1k
views
Multithreading problems with qalign
quasr
parallel
updated 6.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 6.2 years ago by
kirt.onthank
• 0
0
votes
1
reply
884
views
BiocParallel and variable scope in child processes
parallel
variable scope
fork
BiocParallel
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
dan.gatti
• 0
0
votes
1
reply
923
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
7.0 years ago
rna seq
▴ 90
0
votes
9
replies
1.5k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
rna seq
▴ 90
2
votes
4
replies
1.0k
views
Running HTSFilter in paralell
htsfilter
parallel
updated 7.1 years ago by
andrea.rau
▴ 80 • written 7.1 years ago by
Richard Yanicky
▴ 10
0
votes
4
replies
1.1k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
7.2 years ago
ben.ward
▴ 30
0
votes
3
replies
1.3k
views
DEXSeqHTML parallelization error
Parallel
DEXSeq
DEXSeqHTML
7.2 years ago
Neel Aluru
▴ 460
0
votes
1
reply
877
views
Paralelization of maSigPro
maSigPro
parallel
7.4 years ago
gmdc
• 0
0
votes
1
reply
1.0k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
7.9 years ago
Martin Morgan
25k
1
vote
1
reply
802
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 8.3 years ago by
Valerie Obenchain
★ 6.7k • written 8.3 years ago by
affennacken
• 0
27 results • Page
1 of 1
Recent ...
Replies
Comment: TCGA: clinical data and expression data
by
sharifnstu1203002m
• 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Jonathan Göke
▴ 40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
by
Gordon Smyth
47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user)
by
lalanis1
• 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma
by
Gordon Smyth
47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
Votes
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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