Bioconductor Trigger

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2.4k

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RNASeq Cancer trigger RNASeq Cancer trigger

10.2 years ago Anna Esteve Codina ▴ 20

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2.1k

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Cancer GenomicRanges trigger Cancer GenomicRanges trigger

updated 10.7 years ago by Valerie Obenchain ★ 6.8k • written 10.7 years ago by Dan Du ▴ 210

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1.7k

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affy affyio trigger affy affyio trigger

updated 16.0 years ago by cstrato ★ 3.9k • written 16.0 years ago by Germain Paimparay ▴ 10

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1.3k

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Microarray impute PROcess convert mmgmos puma tigre trigger Microarray impute PROcess

updated 10.2 years ago by Solanki, Anisha ▴ 60 • written 10.2 years ago by Antti Honkela ▴ 50

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1.3k

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GUI trigger GUI trigger

updated 19.2 years ago by James W. MacDonald 65k • written 19.2 years ago by Betty Gilbert ▴ 50

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1.2k

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CGH trigger CGH trigger

updated 13.6 years ago by Steve Lianoglou ★ 13k • written 13.6 years ago by Noemi Andor ▴ 100

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1.2k

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trigger trigger

updated 13.5 years ago by Michael Lawrence ★ 11k • written 13.5 years ago by Paul Shannon ★ 1.1k

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1.2k

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cdf probe trigger cdf probe trigger

updated 21.5 years ago by rgentleman ★ 5.5k • written 21.5 years ago by Jens Vilstrup Johansen ▴ 20

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1.1k

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GUI trigger GUI trigger

updated 19.1 years ago by stefano iacus ▴ 430 • written 19.1 years ago by David Williamson ▴ 10

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1.1k

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PROcess trigger PROcess trigger

updated 19.3 years ago by Peter Dalgaard ▴ 20 • written 19.4 years ago by Tae-Hoon Chung ▴ 180

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1.1k

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GUI trigger GUI trigger

updated 19.2 years ago by stefano iacus ▴ 430 • written 19.2 years ago by Betty Gilbert ▴ 50

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1.0k

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trigger parallel processing multicore

updated 9.5 years ago by Valerie Obenchain ★ 6.8k • written 9.5 years ago by affennacken • 0

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1.0k

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limma trigger limma trigger

19.2 years ago Pita ▴ 120

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959

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Proteomics trigger rTANDEM Proteomics trigger rTANDEM

11.4 years ago Frederic Fournier ▴ 40

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933

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Annotation Cancer lumiMouseV1 lumi trigger Annotation Cancer lumiMouseV1 lumi trigger

17.0 years ago Simon Lin ▴ 270

15 results • Page 1 of 1

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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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