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Answer: Answer: Removing batch effect by sva or combat and subsequent correlation analysis by WG
3.6 years ago sebastian.lobentanzer ▴ 50
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Comment: C: Bioconductor vs BioConductor
4.6 years ago sebastian.lobentanzer ▴ 50
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Comment: C: DeSeq2 - adjusted p-value changes substantially after including non-coding RNA [
4.9 years ago sebastian.lobentanzer ▴ 50
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Comment: C: How to extract DESeq2 results for an interaction design
4.9 years ago sebastian.lobentanzer ▴ 50
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1.8k
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Answer: A: How to extract DESeq2 results for an interaction design
4.9 years ago sebastian.lobentanzer ▴ 50
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1.2k
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Answer: A: DeSeq2 - [Almost] no variation in zero counts leads to a non-significant adjuste
4.9 years ago sebastian.lobentanzer ▴ 50
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699
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Comment: C: DESeq design matrix, control for contralateral hemisphere
5.0 years ago sebastian.lobentanzer ▴ 50
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1
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699
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Comment: C: DESeq design matrix, control for contralateral hemisphere
5.0 years ago sebastian.lobentanzer ▴ 50
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1
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699
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Comment: C: DESeq design matrix, control for contralateral hemisphere
5.0 years ago sebastian.lobentanzer ▴ 50
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1.5k
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Comment: C: DESeq2 design matrix: covariates + nested replicates
5.0 years ago sebastian.lobentanzer ▴ 50
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1
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1.5k
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Comment: C: DESeq2 design matrix: covariates + nested replicates
5.0 years ago sebastian.lobentanzer ▴ 50
1
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6
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699
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DESeq design matrix, control for contralateral hemisphere
deseq2
updated 5.0 years ago by 43k • written 5.0 years ago by ▴ 50
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1.5k
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Comment: C: DESeq2 design matrix: covariates + nested replicates
5.0 years ago sebastian.lobentanzer ▴ 50
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1.6k
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Answer: A: combining columns for experimental design in DESeq2
5.0 years ago sebastian.lobentanzer ▴ 50
2
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1
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581
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Correlate DESeq2 variance stabilised counts with clinical covariates
deseq2
updated 5.0 years ago by 43k • written 5.0 years ago by ▴ 50
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Comment: C: "Integrative transcriptomics" reveal or reveals?
5.4 years ago sebastian.lobentanzer ▴ 50
2
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3
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1.8k
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"Integrative transcriptomics" reveal or reveals?
english language omics orthography
updated 5.4 years ago by 52k • written 5.4 years ago by ▴ 50
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3
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1.6k
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ROC curves using normalized sequencing data from 2 experiments
deseq2 pROC ROCR glm
5.5 years ago sebastian.lobentanzer ▴ 50
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1
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1.6k
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Comment: C: ROC curves using normalized sequencing data from 2 experiments
5.5 years ago sebastian.lobentanzer ▴ 50
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1.4k
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Comment: C: Correlate WGCNA modules from 2 separate analyses (small and large RNA)
5.8 years ago sebastian.lobentanzer ▴ 50
2
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3
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1.4k
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Correlate WGCNA modules from 2 separate analyses (small and large RNA)
WGCNA
updated 5.8 years ago by ★ 3.0k • written 5.8 years ago by ▴ 50
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4.4k
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DESeq2 error when creating the DESeqDataSet
deseq2 bioconductor deseqdataset r summarizedexperiment
8.1 years ago sebastian.lobentanzer ▴ 50
2
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4.4k
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Answer: A: DESeq2 error when creating the DESeqDataSet
8.1 years ago sebastian.lobentanzer ▴ 50
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