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2
votes
6
replies
9.6k
views
GEOquery: how to extract experimental data? (confused)
PROcess GEOquery PROcess GEOquery
updated 12.7 years ago by ▴ 60 • written 12.7 years ago by ★ 1.9k
0
votes
4
replies
1.2k
views
GOstats with Reactome database?
GOstats GOstats
updated 12.7 years ago by 25k • written 12.7 years ago by ★ 1.9k
0
votes
4
replies
5.0k
views
biomaRt: using a list as values. confused...
updated 12.9 years ago by ▴ 540 • written 12.9 years ago by ★ 1.9k
0
votes
9
replies
1.6k
views
removing packages from the workspace - is this ok?
Annotation PROcess Annotation PROcess
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ★ 1.9k
0
votes
4
replies
2.6k
views
Any changes in Biomart regarding GO terms? Script crashing today
GO biomaRt GO biomaRt
updated 13.0 years ago by ▴ 540 • written 13.0 years ago by ★ 1.9k
0
votes
6
replies
1.6k
views
problems connecting to Biomart today?
GO biomaRt GO biomaRt
updated 13.2 years ago by ▴ 400 • written 13.2 years ago by ★ 1.9k
0
votes
3
replies
1.2k
views
Curious error with 'subseq' function from BSgenome (IRanges)
Microarray Annotation BSgenome BSgenome Microarray Annotation BSgenome BSgenome
updated 13.9 years ago by 25k • written 13.9 years ago by ★ 1.9k
0
votes
9
replies
2.3k
views
GSEA, topGO, GOstats...? what's a good way to look at GO over-representation?
affy Category nudge affy Category nudge
updated 14.3 years ago by ★ 13k • written 14.3 years ago by ★ 1.9k
0
votes
6
replies
1.4k
views
biomaRt queries: optimal size?
GO biomaRt GO biomaRt
updated 14.4 years ago by 65k • written 14.4 years ago by ★ 1.9k
0
votes
19
replies
1.9k
views
expresso: performing RMA on NON-Affy data?
updated 15.1 years ago by 65k • written 15.1 years ago by ★ 1.9k
0
votes
0
replies
727
views
LIMMA, behaviour of 'lmFit': warnings
limma limma
15.2 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
2
replies
1.2k
views
Question about using Biostrings & BSgenome
oligo oligo
updated 15.6 years ago by ▴ 730 • written 15.6 years ago by ★ 1.9k
0
votes
1
reply
727
views
Number or probes per target. Nimblegen arrays.
GO GO
updated 15.8 years ago by ▴ 730 • written 15.8 years ago by ★ 1.9k
0
votes
1
reply
1.0k
views
Analysis of many Flagged spots
limma impute limma impute
updated 16.7 years ago by ▴ 40 • written 16.7 years ago by ★ 1.9k
0
votes
0
replies
603
views
OT: random priming labelling - label nucleotide or primer?
Microarray Microarray
16.8 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
2
replies
674
views
OT: Problems with Nimblegen scans?
updated 16.9 years ago by ▴ 70 • written 16.9 years ago by ★ 1.9k
0
votes
0
replies
427
views
test - ignore
17.0 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
0
replies
745
views
Unexpectedly high FDR using contrasts in Limma?
17.1 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
5
replies
1.1k
views
Question about turning strings into variable names in R
updated 17.2 years ago by ▴ 150 • written 17.2 years ago by ★ 1.9k
0
votes
1
reply
695
views
Finding peaks on tiling arrays/ moving average?
oligo oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ★ 1.9k
0
votes
0
replies
826
views
R fonts: character set (male/female symbols)
17.3 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
1
reply
977
views
Array normalisation with Limma: would this be reasonable?
ASSIGN ASSIGN
17.4 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
3
replies
1.3k
views
retrieving genomic sequences with biomaRt
Transcription biomaRt Transcription biomaRt
updated 17.6 years ago by ▴ 580 • written 17.6 years ago by ★ 1.9k
0
votes
0
replies
664
views
Normalisation method worries
GO GO
17.6 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
4
replies
797
views
biomaRt: connection stopping
GO biomaRt GO biomaRt
updated 17.7 years ago by 65k • written 17.7 years ago by ★ 1.9k
0
votes
2
replies
701
views
Nimblegen data: oligo, affy, limma?
GO limma GO limma
updated 17.7 years ago by 21k • written 17.7 years ago by ★ 1.9k
0
votes
14
replies
1.4k
views
normalisation assumptions (violation of)
17.8 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
2
replies
1.2k
views
strange effect of "half" bkg substraction in Limma
limma convert limma convert
updated 17.8 years ago by ▴ 310 • written 17.8 years ago by ★ 1.9k
0
votes
1
reply
691
views
Problem with coloring histograms
17.8 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
4
replies
944
views
Boxplots, different results?
limma limma
17.8 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
10
replies
1.4k
views
OT: question about plots, general R, really...
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ★ 1.9k
0
votes
0
replies
512
views
Background correlation with different scanners
17.9 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
0
replies
620
views
question about design
Cancer Cancer
18.0 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
2
replies
714
views
Proportional area Venn diagrams
limma limma
updated 18.0 years ago by 65k • written 18.0 years ago by ★ 1.9k
0
votes
3
replies
2.0k
views
Limma: correct calculation of B statistics (log odds)
limma limmaGUI limma limmaGUI
updated 18.0 years ago by ▴ 290 • written 18.1 years ago by ★ 1.9k
0
votes
1
reply
682
views
Question about topTable output formatting (Limma) in Excel
18.1 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
4
replies
698
views
Searching for data in data.frames
limma limma
updated 18.1 years ago by ★ 1.0k • written 18.1 years ago by ★ 1.9k
0
votes
0
replies
859
views
Different results Limma vs LimmaGUI?
limma limmaGUI limma limmaGUI
18.1 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
6
replies
1.1k
views
Limma: background correction. Use or ignore?
safe safe
updated 18.1 years ago by ★ 2.4k • written 18.1 years ago by ★ 1.9k
0
votes
2
replies
988
views
Limma: background correction. Use or ignore?
limmaGUI limmaGUI
updated 18.1 years ago by 65k • written 18.1 years ago by ★ 1.9k
0
votes
0
replies
781
views
about low B values and inconsistent experiments: array quality issues?
18.1 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
1
reply
1.1k
views
Re-scaling MA plot Y axis in LimmaGUI?
GUI limma limmaGUI GUI limma limmaGUI
18.4 years ago J.delasHeras@ed.ac.uk ★ 1.9k
0
votes
0
replies
652
views
LimmaGUI discards spots with no signal on one channel??
limmaGUI limmaGUI
19.1 years ago J.delasHeras@ed.ac.uk ★ 1.9k
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